Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Effect: The variant's effect on the function of the gene/protein, displayed in the format 'R/C'. R is the value reported by the source (publication, submitter) and this classification may vary between records. C is the value concluded by the curator. Note that in some database the curator uses Summary records to give details on the classification of the variant.Values used: '+' indicating the variant affects function, '+?' probably affects function, '-' does not affect function, '-?' probably does not affect function, '?' effect unknown, '.' effect was not classified.
Exon: Number of exon/intron containing variant; 2 = exon 2, 12i = intron 12, 2i_7i = exons 3 to 7, 8i_9 = border intron 8/exon 9.
DNA change (cDNA): Description of variant at DNA level, based on a coding DNA reference sequence (following HGVS recommendations); e.g. c.123C>T, c.123_145del, c.123_126dup.
Published as: Variant as originally reported (e.g. 521delT); listed only when different from "DNA change". Variants seen in animal models, tested in vitro, predicted from RNA analysis, etc. are described between brackets like c.(456C>G).
RNA change: Description of variant at RNA level (following HGVS recommendations).
- r.123c>u
- r.? = unknown
- r.(?) = RNA not analysed but probably transcribed copy of DNA variant
- r.spl? = RNA not analysed but variant probably affects splicing
- r.(spl?) = RNA not analysed but variant may affect splicing
- r.0? = change expected to abolish transcription
Protein: Description of variant at protein level (following HGVS recommendations).
- p.(Arg345Pro) = change predicted from DNA (RNA not analysed)
- p.Arg345Pro = change derived from RNA analysis
- p.? = unknown effect
- p.0? = probably no protein produced
GVS function: The functional annotation of this position from the Genome Variation Server.
All options:
- intergenic
- near-gene-5
- utr-5
- start-lost
- coding
- non-coding-exon
- coding-near-splice
- non-coding-exon-near-splice
- coding-synonymous
- coding-synonymous-near-splice
- codingComplex
- codingComplex-near-splice
- frameshift
- frameshift-near-splice
- missense
- missense-near-splice
- splice-5
- splice
- non-coding-intron-near-splice
- intron
- splice-3
- stop-gained
- stop-gained-near-splice
- stop-lost
- stop-lost-near-splice
- utr-3
- near-gene-3
Clinical classification: Clinical classification of variant
Allele: On which allele is the variant located? Does not necessarily imply inheritance! 'Paternal' (confirmed or inferred), 'Maternal' (confirmed or inferred), 'Parent #1' or #2 for compound heterozygosity without having screened the parents, 'Unknown' for heterozygosity without having screened the parents, 'Both' for homozygozity.
DNA change (genomic) (hg38): Description of variant at DNA level, based on the genomic DNA reference sequence (following HGVS recommendations).
- g.12345678C>T
- g.12345678_12345890del
- g.12345678_12345890dup
Published as: Variant as originally reported (e.g. 521delT); listed only when different from "DNA change". Variants seen in animal models, tested in vitro, predicted from RNA analysis, etc. are described between brackets like c.(456C>G).
Reference: Reference to publication describing the variant, including links to OMIM (when available), PubMed or or other source, e.g. "den Dunnen ASHG2003 P2346".
DB-ID: Database ID of variant, grouping multiple observations of the same variant together, starting with the HGNC gene symbol, followed by an underscore (_) and a six digit number (e.g. DMD_012345). _000000 is used for variants where DNA was not analysed (change predicted from RNA analysis), variants seen in animal models or variants not seen in humans but functionally tested in vitro.
dbSNP ID: The dbSNP ID.
Frequency: Frequency in which the variant was found; e.g 5/760 chromosomes (in 5 of 760 chromosomes tested), 1/33 patients (in 1 of 33 patients analysed in study), 0.05 controls (in 5% of control cases tested).
Variant remarks: Remarks regarding the variant described, e.g. germline mosaicism in mother, 345 kb deletion, muscle RNA analysed, not in 200 control chromosomes tested, on founder haplotype, etc.
Effect
|
Exon
|
DNA change (cDNA)
|
Published as
|
RNA change
|
Protein
|
GVS function
|
Clinical classification
|
DNA change (genomic) (hg38)
|
Published as
|
Reference
|
DB-ID
|
dbSNP ID
|
Frequency
|
Variant remarks
|
Owner
|
+/. |
- |
c.-152C>T |
- |
r.(=) |
p.(=) |
- |
- |
g.11089397C>T |
CT at −152 |
K L Khoo et al. (2000), ClinVar |
LDLR_000037 |
- |
1/9 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
2 |
c.77_78del |
- |
r.(?) |
p.(Arg26Metfs*25) |
- |
ClinVar |
g.11100232_11100233del |
GA deleted at 77 |
K L Khoo et al. (2000), dbSNP, ClinVar |
LDLR_000038 |
rs879254400 |
1/9 |
- |
Nuur Athirah Binti Mohd Daud |
-/. |
2 |
c.81C>T |
- |
r.(=) |
p.(=) |
- |
ClinVar |
g.11100236C>T |
- |
Alyaa Al-Khateeb et al. (2011), dbSNP, ClinVar |
LDLR_000002 |
rs2228671 |
1/147 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
2 |
c.81C>T |
p.Cys27Cys |
r.(=) |
p.(=) |
- |
Benign |
g.11100236C>T |
- |
{DOI:Nor Idahriani Muhd Nor:10.35119/MYJO.V1I2.18} |
LDLR_000002 |
rs2228671 |
- |
- |
Nur Aisyah Athirah |
./. |
2i |
c.190+4A>T |
- |
r.spl? |
p.? |
- |
ClinVar |
g.11100349A>T |
- |
Alyaa Al-Khateeb et al. (2011), dbSNP, ClinVar |
LDLR_000023 |
rs769446356 |
1/147 |
- |
Nuur Athirah Binti Mohd Daud |
./. |
2i |
c.190+56G>A |
- |
r.(=) |
p.(=) |
- |
ClinVar |
g.11100401G>A |
- |
Alyaa Al-Khateeb et al. (2011), dbSNP, ClinVar |
LDLR_000003 |
rs3745677 |
3/147 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
2i |
c.190+58C>T |
- |
r.(=) |
p.(=) |
- |
- |
g.11100403C>T |
- |
Alyaa Al-Khateeb et al. (2011), dbSNP |
LDLR_000004 |
rs3745678 |
7/147 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
2i |
c.190+58C>T |
- |
r.(=) |
p.(=) |
- |
- |
g.11100403C>T |
- |
{DOI:Nor Idahriani Muhd Nor:10.35119/MYJO.V1I2.18} |
LDLR_000004 |
rs3745678 |
- |
- |
Nur Aisyah Athirah |
+/. |
3 |
c.268G>A |
- |
r.(?) |
p.(Asp90Asn) |
- |
ClinVar |
g.11102741G>A |
GAT>AAT at 268 |
K L Khoo et al. (2000), dbSNP, ClinVar |
LDLR_000039 |
rs749038326 |
1/9 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
3 |
c.268G>A |
- |
r.(?) |
p.(Asp90Asn) |
- |
ClinVar |
g.11102741G>A |
D69N |
M Azian et ai. (2006), dbSNP, ClinVar |
LDLR_000039 |
rs749038326 |
1/33 |
- |
Nuur Athirah Binti Mohd Daud |
-?/. |
3 |
c.300C>T |
- |
r.(=) |
p.(=) |
- |
ClinVar |
g.11102773C>T |
- |
Alyaa Al-Khateeb et al. (2011)dbSNP |
LDLR_000005 |
rs766709484 |
1/147 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
3 |
c.301G>A |
- |
r.(?) |
p.(Glu101Lys) |
- |
Pathogenic/Likely pathogenic |
g.11102774G>A |
- |
{DOI:Nor Idahriani Muhd Nor:10.35119/MYJO.V1I2.18} |
LDLR_000024 |
rs144172724 |
- |
- |
Nur Aisyah Athirah |
./. |
3 |
c.301G>A |
- |
r.(?) |
p.(Glu101Lys) |
- |
ClinVar |
g.11102774G>A |
- |
Alyaa Al-Khateeb et al. (2011), dbSNP, ClinVar |
LDLR_000024 |
rs144172724 |
11/147 |
- |
Nuur Athirah Binti Mohd Daud |
./. |
3 |
c.301G>A |
- |
r.(?) |
p.(Glu101Lys) |
- |
ClinVar |
g.11102774G>A |
p.Glu101Lys in exon 3 |
Kah Lin Khoo et al. (2016), dbSNP, ClinVar |
LDLR_000024 |
rs144172724 |
3/10 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
3i |
c.313+1G>A |
- |
r.spl? |
p.? |
- |
- |
g.11102787G>A |
- |
(OMIM 0054), ClinVar |
LDLR_000031 |
- |
1/40 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
3i |
c.313+1G>A |
- |
r.spl? |
p.? |
- |
- |
g.11102787G>A |
G>A at 313+1 |
K L Khoo et al. (2000), ClinVar, (OMIM 0054) |
LDLR_000031 |
- |
1/10 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
4 |
c.344G>A |
- |
r.(?) |
p.(Arg115His) |
- |
ClinVar |
g.11105250G>A |
CGC>CAC at 344 |
K L Khoo et al. (2000), dbSNP, ClinVar |
LDLR_000040 |
rs201102461 |
2/9 |
- |
Nuur Athirah Binti Mohd Daud |
+?/. |
4 |
c.415G>C |
- |
r.(?) |
p.(Asp139His) |
- |
ClinVar |
g.11105321G>C |
- |
Alyaa Al-Khateeb et al. (2011), dbSNP, ClinVar |
LDLR_000025 |
rs879254517 |
1/147 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
4 |
c.415G>C |
- |
r.(?) |
p.(Asp139His) |
- |
Likely pathogenic |
g.11105321G>C |
- |
{DOI:Nor Idahriani Muhd Nor:10.35119/MYJO.V1I2.18} |
LDLR_000025 |
rs879254517 |
- |
- |
Nur Aisyah Athirah |
+/. |
4 |
c.530C>T |
- |
r.(?) |
p.(Ser177Leu) |
- |
Pathogenic/Likely pathogenic |
g.11105436C>T |
- |
Noor Shafina Mohd Nor et al.(2019) |
LDLR_000060 |
rs121908026 |
- |
- |
Nur Aisyah Athirah |
+/. |
4 |
c.601G>A |
- |
r.(?) |
p.(Glu201Lys) |
- |
Likely pathogenic |
g.11105507G>A |
- |
{DOI:Nor Idahriani Muhd Nor:10.35119/MYJO.V1I2.18} |
LDLR_000026 |
rs879254589 |
- |
- |
Nur Aisyah Athirah |
+?/. |
4 |
c.601G>A |
- |
r.(?) |
p.(Glu201Lys) |
- |
ClinVar |
g.11105507G>A |
- |
Alyaa Al-Khateeb et al. (2011), dbSNP, ClinVar |
LDLR_000026 |
rs879254589 |
9/147 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
4 |
c.660delC |
- |
r.(?) |
p.(Asp221Thrfs*44) |
- |
- |
g.11105566delC |
c.660delC in exon 4 |
Kah Lin Khoo et al. (2016) |
LDLR_000053 |
- |
1/10 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
5 |
c.757C>T |
- |
r.(?) |
p.(Arg253Trp) |
- |
- |
g.11106627C>T |
CGG>TGG at 757 |
K L Khoo et al. (2000), ClinVar |
LDLR_000041 |
- |
1/9 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
5 |
c.757C>T |
- |
r.(?) |
p.(Arg253Trp) |
- |
- |
g.11106627C>T |
CGG>TGG at 757 |
K L Khoo et al. (2000), ClinVar |
LDLR_000041 |
- |
1/10 |
- |
Nuur Athirah Binti Mohd Daud |
+?/. |
5 |
c.763T>A |
- |
r.(?) |
p.(Cys255Ser) |
- |
ClinVar |
g.11106633T>A |
- |
dbSNP, ClinVar |
LDLR_000027 |
rs879254668 |
4/40 |
- |
Nuur Athirah Binti Mohd Daud |
+?/. |
5 |
c.763T>A |
- |
r.(?) |
p.(Cys255Ser) |
- |
ClinVar |
g.11106633T>A |
- |
Alyaa Al-Khateeb et al. (2011), dbSNP, ClinVar |
LDLR_000027 |
rs879254668 |
10/147 |
- |
Nuur Athirah Binti Mohd Daud |
+?/. |
5 |
c.763T>A |
- |
r.(?) |
p.(Cys255Ser) |
- |
ClinVar |
g.11106633T>A |
Cys255Ser in exon 5 |
Kah Lin Khoo et al. (2016), dbSNP, ClinVar |
LDLR_000027 |
rs879254668 |
1/10 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
5 |
c.763T>A |
- |
r.(?) |
p.(Cys255Ser) |
- |
Likely pathogenic |
g.11106633T>A |
- |
{DOI:Nor Idahriani Muhd Nor:10.35119/MYJO.V1I2.18} |
LDLR_000027 |
rs879254668 |
- |
- |
Nur Aisyah Athirah |
+/. |
5 |
c.763T>A |
- |
r.(?) |
p.(Cys255Ser) |
- |
ClinVar |
g.11106633T>A |
C234S |
M Azian et al. (2006), dbSNP, ClinVar |
LDLR_000027 |
rs879254668 |
2/33 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
5 |
c.763T>A |
- |
r.(?) |
p.(Cys255Ser) |
- |
ClinVar |
g.11106633T>A |
C234S |
M Azian et al. (2006), dbSNP, ClinVar |
LDLR_000027 |
rs879254668 |
7/33 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
6 |
c.829G>A |
- |
r.(?) |
p.(Glu277Lys) |
- |
- |
g.11107403G>A |
GAG>AAG at 829 |
K L Khoo et al. (2000), ClinVar |
LDLR_000001 |
- |
1 |
- |
Nuur Athirah Binti Mohd Daud |
./. |
6 |
c.910G>A |
- |
r.(?) |
p.(Asp304Asn) |
- |
ClinVar |
g.11107484G>A |
Asp304Asn in exon 6 |
Kah Lin Khoo et al. (2016), dbSNP, (OMIM 0008), ClinVar |
LDLR_000006 |
rs121908030 |
1/10 |
- |
Nuur Athirah Binti Mohd Daud |
./. |
6 |
c.910G>A |
- |
r.(?) |
p.(Asp304Asn) |
- |
ClinVar |
g.11107484G>A |
- |
Alyaa Al-Khateeb et al. (2011), dbSNP, (OMIM 0008), ClinVar |
LDLR_000006 |
rs121908030 |
7/147 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
6 |
c.910G>A |
- |
r.(?) |
p.(Asp304Asn) |
- |
Pathogenic/Likely pathogenic |
g.11107484G>A |
- |
{DOI:Nor Idahriani Muhd Nor:10.35119/MYJO.V1I2.18} |
LDLR_000006 |
rs121908030 |
- |
- |
Nur Aisyah Athirah |
-/. |
6i |
c.940+36G>A |
- |
r.(=) |
p.(=) |
- |
ClinVar |
g.11107550G>A |
- |
Alyaa Al-Khateeb et al. (2011), dbSNP, ClinVar |
LDLR_000007 |
rs13306513 |
3/147 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
6i |
c.940+36G>A |
- |
r.(=) |
p.(=) |
- |
Benign |
g.11107550G>A |
- |
{DOI:Nor Idahriani Muhd Nor:10.35119/MYJO.V1I2.18} |
LDLR_000007 |
rs13306513 |
- |
- |
Nur Aisyah Athirah |
+/. |
6i |
c.940+775G>A |
- |
r.(=) |
p.(=) |
- |
- |
g.11108289G>A |
- |
Say-Hean Lye et al. (2013), dbSNP |
LDLR_000036 |
rs2569556 |
1 |
- |
Nuur Athirah Binti Mohd Daud |
+?/. |
6i |
c.940+1187G>T |
- |
r.(=) |
p.(=) |
- |
- |
g.11108701G>T |
- |
Livy Alex et al. (2012), dbSNP |
LDLR_000035 |
rs61318752 |
1/2 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
7 |
c.986G>A |
- |
r.(?) |
p.(Cys329Tyr) |
- |
ClinVar |
g.11110697G>A |
TGC>TAC at 986 |
K L Khoo et al. (2000), dbSNP, ClinVar |
LDLR_000045 |
rs761954844 |
2/10 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
7i |
c.1060+7C>A |
- |
r.(=) |
p.(=) |
- |
- |
g.11110778C>A |
c.1060+7T>C |
Alyaa Al-Khateeb et al. (2011), dbSNP |
LDLR_000008 |
rs2738442 |
18/147 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
7i |
c.1060+7C>T |
c.1060+7T>C |
r.(=) |
p.(=) |
- |
Uncertain significance |
g.11110778C>T |
- |
{DOI:Nor Idahriani Muhd Nor:10.35119/MYJO.V1I2.18} |
LDLR_000059 |
rs2738442 |
- |
- |
Nur Aisyah Athirah |
+/. |
7i |
c.1060+10G>C |
- |
r.(=) |
p.(=) |
- |
- |
g.11110781G>C |
- |
Alyaa Al-Khateeb et al. (2011), ClinVar |
LDLR_000009 |
- |
5/147 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
8 |
c.1132C>T |
- |
r.(?) |
p.(Gln378*) |
- |
ClinVar |
g.11111585C>T |
CAG>TAG at 1132 |
K L Khoo et al. (2000), dbSNP, ClinVar |
LDLR_000046 |
rs879254802 |
1/10 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
8 |
c.1132C>T |
- |
r.(?) |
p.(Gln378*) |
- |
ClinVar |
g.11111585C>T |
CAG>TAG at 1132 |
K L Khoo et al. (2000), dbSNP, ClinVar |
LDLR_000046 |
rs879254802 |
1 |
- |
Nuur Athirah Binti Mohd Daud |
-?/. |
8i |
c.1186+41T>A |
- |
r.(=) |
p.(=) |
- |
ClinVar |
g.11111680T>A |
- |
Alyaa Al-Khateeb et al. (2011), dbSNP, ClinVar |
LDLR_000010 |
rs536387604 |
1/147 |
- |
Nuur Athirah Binti Mohd Daud |
./. |
9 |
c.1194C>T |
- |
r.(=) |
p.(=) |
- |
ClinVar |
g.11113285C>T |
- |
Alyaa Al-Khateeb et al. (2011), dbSNP, ClinVar |
LDLR_000011 |
rs13306498 |
5/147 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
9 |
c.1194C>T |
p.Ile398Ile |
r.(=) |
p.(=) |
- |
Conflicting interpretations of pathogenicity |
g.11113285C>T |
- |
{DOI:Nor Idahriani Muhd Nor:10.35119/MYJO.V1I2.18} |
LDLR_000011 |
rs13306498 |
- |
- |
Nur Aisyah Athirah |
+/. |
9 |
c.1216C>T |
- |
r.(?) |
p.(Arg406Trp) |
- |
- |
g.11113307C>T |
R385W |
M Azian et al. (2006), ClinVar |
LDLR_000032 |
- |
2/33 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
9 |
c.1216C>T |
- |
r.(?) |
p.(Arg406Trp) |
- |
- |
g.11113307C>T |
- |
ClinVar |
LDLR_000032 |
- |
1/40 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
9 |
c.1241T>G |
- |
r.(?) |
p.(Leu414Arg) |
- |
ClinVar |
g.11113332T>G |
p.Leu414Arg in exon 9 |
Kah Lin Khoo et al. (2016), dbSNP, ClinVar |
LDLR_000047 |
rs748554592 |
1/5 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
9 |
c.1241T>G |
- |
r.(?) |
p.(Leu414Arg) |
- |
ClinVar |
g.11113332T>G |
CTG>CGG at 1242 |
K L Khoo et al. (2000), dbSNP, ClinVar |
LDLR_000047 |
rs748554592 |
2/10 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
9 |
c.1268T>C |
- |
r.(?) |
p.(Ile423Thr) |
- |
ClinVar |
g.11113359T>C |
ATC>ACC at 1269 |
K L Khoo et al. (2000), dbSNP, ClinVar |
LDLR_000042 |
rs879254849 |
1/9 |
- |
Nuur Athirah Binti Mohd Daud |
./. |
9 |
c.1284C>G |
- |
r.(?) |
p.(Asn428Lys) |
- |
ClinVar |
g.11113375C>G |
AAC>AAG at 1283 |
K L Khoo et al. (2000), dbSNP, ClinVar |
LDLR_000051 |
rs368708058 |
1 |
- |
Nuur Athirah Binti Mohd Daud |
-/. |
9i |
c.1359-30C>T |
- |
r.(=) |
p.(=) |
- |
ClinVar |
g.11113505C>T |
- |
Alyaa Al-Khateeb et al. (2011), dbSNP, ClinVar |
LDLR_000012 |
rs1003723 |
2/147 |
- |
Nuur Athirah Binti Mohd Daud |
-?/. |
10 |
c.1411A>G |
- |
r.(?) |
p.(Arg471Gly) |
- |
ClinVar |
g.11113587A>G |
- |
Alyaa Al-Khateeb et al. (2011), dbSNP, ClinVar |
LDLR_000013 |
rs879254891 |
17/147 |
- |
Nuur Athirah Binti Mohd Daud |
-/. |
10 |
c.1413A>G |
- |
r.(=) |
p.(=) |
- |
ClinVar |
g.11113589A>G |
R450R |
M Azian et al. (2006), dbSNP, ClinVar |
LDLR_000033 |
rs5930 |
4/33 |
- |
Nuur Athirah Binti Mohd Daud |
-/. |
10 |
c.1413A>G |
- |
r.(=) |
p.(=) |
- |
ClinVar |
g.11113589A>G |
c.1413G>A |
dbSNP, ClinVar |
LDLR_000033 |
rs5930 |
15/40 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
10 |
c.1432G>A |
- |
r.(?) |
p.(Gly478Arg) |
- |
- |
g.11113608G>A |
GGG>AGG at 1432 |
K L Khoo et al. (2000), ClinVar |
LDLR_000048 |
- |
1/10 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
10 |
c.1474G>A |
- |
r.(?) |
p.(Asp492Asn) |
- |
- |
g.11113650G>A |
GAC>AAC at 1474 |
K L Khoo et al. (2000), ClinVar |
LDLR_000049 |
- |
1/10 |
- |
Nuur Athirah Binti Mohd Daud |
./. |
10i |
c.1586+5G>C |
- |
r.spl? |
p.? |
- |
ClinVar |
g.11113767G>C |
c.1586+5 G to C in intron 10 |
Kah Lin Khoo et al. (2016), dbSNP, ClinVar |
LDLR_000055 |
rs781362878 |
1/5 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
11 |
c.1617C>T |
p.Pro539Pro |
r.(=) |
p.(=) |
- |
Benign |
g.11116124C>T |
- |
{DOI:Nor Idahriani Muhd Nor:10.35119/MYJO.V1I2.18} |
LDLR_000014 |
rs5929 |
- |
- |
Nur Aisyah Athirah |
-/. |
11 |
c.1617C>T |
- |
r.(=) |
p.(=) |
- |
ClinVar |
g.11116124C>T |
- |
Alyaa Al-Khateeb et al. (2011), dbSNP, ClinVar |
LDLR_000014 |
rs5929 |
6/147 |
- |
Nuur Athirah Binti Mohd Daud |
-/. |
11 |
c.1617C>T |
- |
r.(=) |
p.(=) |
- |
ClinVar |
g.11116124C>T |
N510N |
M Azian et al. (2006), dbSNP, ClinVar |
LDLR_000014 |
rs5929 |
4/33 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
11i |
c.1705+56C>T |
- |
r.(=) |
p.(=) |
- |
Likely benign |
g.11116268C>T |
- |
{DOI:Nor Idahriani Muhd Nor:10.35119/MYJO.V1I2.18} |
LDLR_000015 |
rs4508523 |
- |
- |
Nur Aisyah Athirah |
./. |
11i |
c.1705+56C>T |
- |
r.(=) |
p.(=) |
- |
ClinVar |
g.11116268C>T |
- |
Alyaa Al-Khateeb et al. (2011), dbSNP, ClinVar |
LDLR_000015 |
rs4508523 |
12/147 |
- |
Nuur Athirah Binti Mohd Daud |
-?/. |
11i |
c.1705+112C>G |
- |
r.(=) |
p.(=) |
- |
ClinVar |
g.11116324C>G |
- |
Alyaa Al-Khateeb et al. (2011), dbSNP, ClinVar |
LDLR_000016 |
rs879254995 |
1/147 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
11i |
c.1705+112C>G |
- |
r.(=) |
p.(=) |
- |
Likely benign |
g.11116324C>G |
- |
{DOI:Nor Idahriani Muhd Nor:10.35119/MYJO.V1I2.18} |
LDLR_000016 |
rs879254995 |
- |
- |
Nur Aisyah Athirah |
+/. |
11i |
c.1705+117T>G |
- |
r.(=) |
p.(=) |
- |
- |
g.11116329T>G |
- |
Alyaa Al-Khateeb et al. (2011) |
LDLR_000019 |
- |
2/147 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
11i |
c.1705+117T>G |
- |
r.(=) |
p.(=) |
- |
- |
g.11116329T>G |
- |
{DOI:Nor Idahriani Muhd Nor:10.35119/MYJO.V1I2.18} |
LDLR_000019 |
- |
- |
- |
Nur Aisyah Athirah |
-/. |
11i |
c.1706-69G>T |
- |
r.(=) |
p.(=) |
- |
ClinVar |
g.11116790G>T |
- |
Alyaa Al-Khateeb et al. (2011), dbSNP, ClinVar |
LDLR_000018 |
rs7259278 |
1/147 |
- |
Nuur Athirah Binti Mohd Daud |
-/. |
11i |
c.1706-55A>C |
- |
r.(=) |
p.(=) |
- |
ClinVar |
g.11116804A>C |
- |
Alyaa Al-Khateeb et al. (2011), dbSNP, ClinVar |
LDLR_000017 |
rs2738447 |
6/147 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
12 |
c.1706_1845dup |
- |
r.(?) |
p.(Asp616Ilefs*96) |
- |
- |
g.11116859_11116998dup |
- |
Alyaa Al-Khateeb et al. (2011) |
LDLR_000028 |
- |
2/147 |
- |
Nuur Athirah Binti Mohd Daud |
./. |
12 |
c.1729T>C |
- |
r.(?) |
p.(Trp577Arg) |
- |
ClinVar |
g.11116882T>C |
p.Trp576Arg in exon 12 |
Kah Lin Khoo et al. (2016), dbSNP, ClinVar |
LDLR_000056 |
rs879255000 |
1/5 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
12i |
c.1773C>T |
p.Asn591Asn |
r.(=) |
p.(=) |
- |
Benign/Likely benign |
g.11116926C>T |
- |
{DOI:Nor Idahriani Muhd Nor:10.35119/MYJO.V1I2.18} |
LDLR_000020 |
rs688 |
- |
- |
Nur Aisyah Athirah |
./. |
12 |
c.1773C>T |
- |
r.(=) |
p.(=) |
- |
ClinVar |
g.11116926C>T |
c.1773T>C |
dbSNP, ClinVar |
LDLR_000020 |
rs688 |
19/40 |
- |
Nuur Athirah Binti Mohd Daud |
./. |
12 |
c.1773C>T |
- |
r.(=) |
p.(=) |
- |
ClinVar |
g.11116926C>T |
N570N |
M Azian et al. (2006), dbSNP, ClinVar |
LDLR_000020 |
rs688 |
5/33 |
- |
Nuur Athirah Binti Mohd Daud |
./. |
12 |
c.1773C>T |
- |
r.(=) |
p.(=) |
- |
ClinVar |
g.11116926C>T |
- |
Alyaa Al-Khateeb et al. (2011), dbSNP, ClinVar |
LDLR_000020 |
rs688 |
7/147 |
- |
Nuur Athirah Binti Mohd Daud |
./. |
13 |
c.1959T>C |
- |
r.(=) |
p.(=) |
- |
ClinVar |
g.11120205T>C |
V632V |
M Azian et al. (2006), dbSNP, ClinVar |
LDLR_000021 |
rs5925 |
7/33 |
- |
Nuur Athirah Binti Mohd Daud |
./. |
13 |
c.1959T>C |
- |
r.(=) |
p.(=) |
- |
ClinVar |
g.11120205T>C |
- |
Alyaa Al-Khateeb et al. (2011), dbSNP, ClinVar |
LDLR_000021 |
rs5925 |
1/147 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
14 |
c.1996_2012del |
- |
r.(?) |
p.(Trp666Profs*45) |
- |
ClinVar |
g.11120378_11120394del |
c.1996_2012del17 |
Alyaa Al-Khateeb et al. (2011), dbSNP, ClinVar |
LDLR_000030 |
rs879255104 |
4/147 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
14 |
c.2050G>A |
- |
r.(?) |
p.(Ala684Thr) |
- |
ClinVar |
g.11120432G>A |
GCC>ACC at 2048 |
K L Khoo et al. (2000), dbSNP, ClinVar |
LDLR_000044 |
rs774730452 |
1/9 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
14 |
c.2087G>A |
- |
r.(?) |
p.(Cys696Tyr) |
- |
ClinVar |
g.11120469G>A |
TGC>TAC at 2087 |
K L Khoo et al. (2000), dbSNP, ClinVar |
LDLR_000043 |
rs879255134 |
1/9 |
- |
Nuur Athirah Binti Mohd Daud |
./. |
14 |
c.2100C>G |
- |
r.(?) |
p.(Asp700Glu) |
- |
ClinVar |
g.11120482C>G |
- |
Alyaa Al-Khateeb et al. (2011), dbSNP, ClinVar |
LDLR_000029 |
rs759858813 |
5/147 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
14 |
c.2108_2114dup |
- |
r.(?) |
p.(Arg706Alafs*13) |
- |
ClinVar |
g.11120490_11120496dup |
TGCTGGCins2108 |
K L Khoo et al. (2000), dbSNP, ClinVar |
LDLR_000050 |
rs879255141 |
1/10 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
14 |
c.2132G>A |
- |
r.(?) |
p.(Cys711Tyr) |
- |
Likely pathogenic |
g.11120514G>A |
- |
J K Chahil et al.(2012) |
LDLR_000052 |
rs879255145 |
- |
- |
Nur Aisyah Athirah |
+?/. |
14 |
c.2132G>A |
- |
r.(?) |
p.(Cys711Tyr) |
- |
ClinVar |
g.11120514G>A |
Cys711Tyr in exon 14 |
Kah Lin Khoo et al. (2016), dbSNP, ClinVar |
LDLR_000052 |
rs879255145 |
3/10 |
- |
Nuur Athirah Binti Mohd Daud |
+?/. |
14 |
c.2132G>A |
- |
r.(?) |
p.(Cys711Tyr) |
- |
ClinVar |
g.11120514G>A |
Cys711Tyr in exon 14 |
Kah Lin Khoo et al. (2016), dbSNP, ClinVar |
LDLR_000052 |
rs879255145 |
1 |
- |
Nuur Athirah Binti Mohd Daud |
+?/. |
14 |
c.2132G>A |
- |
r.(?) |
p.(Cys711Tyr) |
- |
Likely pathogenic |
g.11120514G>A |
- |
J K Chahil et al.(2012) |
LDLR_000052 |
rs879255145 |
- |
- |
Nur Aisyah Athirah |
-?/. |
15 |
c.2209A>G |
- |
r.(?) |
p.(Arg737Gly) |
- |
ClinVar |
g.11123242A>G |
R716G |
M Azian et al. (2006), dbSNP, ClinVar |
LDLR_000058 |
rs879255165 |
1/33 |
- |
Nuur Athirah Binti Mohd Daud |
-/. |
15 |
c.2232A>G |
- |
r.(=) |
p.(=) |
- |
ClinVar |
g.11123265A>G |
- |
Alyaa Al-Khateeb et al. (2011), dbSNP, ClinVar |
LDLR_000022 |
rs5927 |
5/147 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
15 |
c.2232A>G |
p.Arg744Arg |
r.(=) |
p.(=) |
- |
Benign |
g.11123265A>G |
- |
{DOI:Nor Idahriani Muhd Nor:10.35119/MYJO.V1I2.18} |
LDLR_000022 |
rs5927 |
- |
- |
Nur Aisyah Athirah |
+/. |
15i |
c.2311+1G>T |
- |
r.spl? |
p.? |
- |
- |
g.11123345G>T |
c.2311+1 G to T in intron 15 |
Kah Lin Khoo et al. (2016), ClinVar |
LDLR_000057 |
- |
1/2 |
- |
Nuur Athirah Binti Mohd Daud |
+?/. |
15i |
c.2312-1679T>C |
- |
r.(=) |
p.(=) |
- |
- |
g.11126329T>C |
- |
Livy Alex et al. (2012), dbSNP |
LDLR_000034 |
rs10422244 |
1/2 |
- |
Nuur Athirah Binti Mohd Daud |
+/. |
16 |
c.2389G>A |
- |
r.(?) |
p.(Val797Met) |
- |
- |
g.11128085G>A |
Val797Met in exon 16 |
Kah Lin Khoo et al. (2016), ClinVar |
LDLR_000054 |
- |
1/10 |
- |
Nuur Athirah Binti Mohd Daud |