Malaysian Node of the Human Variome Project Database
BRCA1 (BRCA1, DNA repair associated)
LOVD v.3.0 Build 29 [
Current LOVD status
]
Register as submitter
|
Log in
Curator:
MyHVP
View all genes
View BRCA1 gene homepage
View graphs about the BRCA1 gene database
Create a new gene entry
View all transcripts
View all transcripts of gene BRCA1
Create a new transcript information entry
View all variants
View all variants affecting transcripts
View unique variants in gene BRCA1
View all variants in gene BRCA1
Full data view for gene BRCA1
Create a new data submission
View active genomic custom columns
Enable more genomic custom columns
View all individuals
View all individuals with variants in gene BRCA1
Create a new data submission
View active custom columns
Enable more custom columns
View all diseases
View all diseases associated with gene BRCA1
Create a new disease information entry
View available phenotype columns
View all screenings
View all screenings for gene BRCA1
Create a new data submission
View active custom columns
Enable more custom columns
Submit new data
Unique variants in the BRCA1 gene
The variants shown are described using the NM_007294.3 transcript reference sequence.
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Effect
: The variant's effect on the function of the gene/protein, displayed in the format 'R/C'. R is the value reported by the source (publication, submitter) and this classification may vary between records. C is the value concluded by the curator. Note that in some database the curator uses Summary records to give details on the classification of the variant.Values used: '+' indicating the variant affects function, '+?' probably affects function, '-' does not affect function, '-?' probably does not affect function, '?' effect unknown, '.' effect was not classified.
Reported
: The number of times this variant has been reported in the database.
Exon
: Number of exon/intron containing variant; 2 = exon 2, 12i = intron 12, 2i_7i = exons 3 to 7, 8i_9 = border intron 8/exon 9.
DNA change (cDNA)
: Description of variant at DNA level, based on a coding DNA reference sequence (following HGVS recommendations); e.g. c.123C>T, c.123_145del, c.123_126dup.
Published as
: Variant as originally reported (e.g. 521delT); listed only when different from "DNA change". Variants seen in animal models, tested in vitro, predicted from RNA analysis, etc. are described between brackets like c.(456C>G).
RNA change
: Description of variant at RNA level (following HGVS recommendations).
r.123c>u
r.? = unknown
r.(?) = RNA not analysed but probably transcribed copy of DNA variant
r.spl? = RNA not analysed but variant probably affects splicing
r.(spl?) = RNA not analysed but variant may affect splicing
r.0? = change expected to abolish transcription
Protein
: Description of variant at protein level (following HGVS recommendations).
p.(Arg345Pro) = change predicted from DNA (RNA not analysed)
p.Arg345Pro = change derived from RNA analysis
p.? = unknown effect
p.0? = probably no protein produced
GVS function
: The functional annotation of this position from the Genome Variation Server.
All options:
intergenic
near-gene-5
utr-5
start-lost
coding
non-coding-exon
coding-near-splice
non-coding-exon-near-splice
coding-synonymous
coding-synonymous-near-splice
codingComplex
codingComplex-near-splice
frameshift
frameshift-near-splice
missense
missense-near-splice
splice-5
splice
non-coding-intron-near-splice
intron
splice-3
stop-gained
stop-gained-near-splice
stop-lost
stop-lost-near-splice
utr-3
near-gene-3
Clinical classification
: Clinical classification of variant
DNA change (genomic) (hg38)
: Description of variant at DNA level, based on the genomic DNA reference sequence (following HGVS recommendations).
g.12345678C>T
g.12345678_12345890del
g.12345678_12345890dup
Published as
: Variant as originally reported (e.g. 521delT); listed only when different from "DNA change". Variants seen in animal models, tested in vitro, predicted from RNA analysis, etc. are described between brackets like c.(456C>G).
Reference
: Reference to publication describing the variant, including links to OMIM (when available), PubMed or or other source, e.g. "den Dunnen ASHG2003 P2346".
DB-ID
: Database ID of variant, grouping multiple observations of the same variant together, starting with the HGNC gene symbol, followed by an underscore (_) and a six digit number (e.g. DMD_012345). _000000 is used for variants where DNA was not analysed (change predicted from RNA analysis), variants seen in animal models or variants not seen in humans but functionally tested in vitro.
dbSNP ID
: The dbSNP ID.
Frequency
: Frequency in which the variant was found; e.g 5/760 chromosomes (in 5 of 760 chromosomes tested), 1/33 patients (in 1 of 33 patients analysed in study), 0.05 controls (in 5% of control cases tested).
Variant remarks
: Remarks regarding the variant described, e.g. germline mosaicism in mother, 345 kb deletion, muscle RNA analysed, not in 200 control chromosomes tested, on founder haplotype, etc.
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
133 entries on 2 pages. Showing entries 1 - 100.
10 per page
25 per page
50 per page
100 per page
250 per page
500 per page
1000 per page
Legend
How to query
« First
Prev
1
2
Next
Last »
Effect
Reported
Exon
DNA change (cDNA)
Published as
RNA change
Protein
GVS function
Clinical classification
DNA change (genomic) (hg38)
Published as
Reference
DB-ID
dbSNP ID
Frequency
Variant remarks
Owner
+/.
1
-
c.-232_4484del
c.-232-?_4484+?del
r.spl?
p.?
-
Pathogenic
g.43076488_43125483del
-
Timothy R Rebbeck et al.(2018)
BRCA1_000108
-
1/72 families
-
Nur Aisyah Athirah
?/?
1
-
c.-19-10T>C
-
r.(=)
p.(=)
-
ClinVar
g.43124125A>G
-
E Thirthagiri et al. (2008)
dbSNP
BRCA1_000034
rs201866997
-
-
MyHVP
+/.
2
-
c.61del
-
r.(?)
p.(Ile21Serfs*2)
-
Pathogenic,
ClinVar
g.43124036del
-
Timothy R Rebbeck et al.(2018)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000120
rs273902778
1/359, 1/72 families
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/., +/?
2
2
c.61delA
-
r.(?)
p.(Ile21Serfs*2)
-
Pathogenic,
ClinVar
g.43124036delT
-
E Thirthagiri et al. (2008)
dbSNP
,
Ava Kwong et al.(2016)
BRCA1_000006
rs273902778
-
Mutation type: Deletion - frameshift
MyHVP
,
Nur Aisyah Athirah
+/.
1
-
c.66dup
-
r.(?)
p.(Glu23Argfs*18)
-
Pathogenic
g.43124031dup
-
Timothy R Rebbeck et al.(2018)
BRCA1_000121
rs80357783
2/72 families
-
Nur Aisyah Athirah
+/., +/?
4
2
c.66dupA
-
r.(?)
p.(Glu23Argfs*18)
-
Pathogenic,
ClinVar
g.43124031dupT
-
E Thirthagiri et al. (2008)
dbSNP
,
Ava Kwong et al.(2016)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000008
rs80357783
1/1726, 1/359
Insertion - frameshift
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
3
-
c.68_69del
-
r.(?)
p.(Glu23Valfs*17)
-
Pathogenic,
ClinVar
g.43124028_43124029del
-
Peter Choon Eng Kang et al. (2014)
,
dbSNP
,
(OMIM 0003)
,
ClinVar
,
Timothy R Rebbeck et al.(2018)
,
1 more item
BRCA1_000055
rs80357914
3/11, 4/359, 4/72 families
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/., +/?
3
2
c.68_69delAG
-
r.(?)
p.(Glu23Valfs*17)
-
Pathogenic,
ClinVar
g.43124028_43124029delCT
-
E Thirthagiri et al. (2008)
dbSNP
,
Ava Kwong et al.(2016)
,
Wen WX, Allen J, Lai KN, et al.(2018)
BRCA1_000007
rs80357914
4/17
Mutation type: Deletion - frameshif
MyHVP
,
Nur Aisyah Athirah
-/?
1
-
c.81-14C>T
-
r.(?)
p.(Glu1148Argfs*7)
-
ClinVar
g.43092089delC
-
E Thirthagiri et al. (2008)
,
dbSNP
,
ClinVar
BRCA1_000017
rs80358006
-
-
MyHVP
+/.
1
-
c.81_134del
c.81-?_134+?del
r.(?)
p.(Cys27*)
-
ClinVar
g.43115726_43115779del
-
Timothy R Rebbeck et al.(2018)
dbSNP
BRCA1_000122
rs1555599208
2/72 families
-
Nur Aisyah Athirah
+/.
1
-
c.110C>A
-
r.(?)
p.(Thr37Lys)
-
ClinVar
g.43115750G>T
-
Xiaohong R Yang et al. (2017)
,
dbSNP
,
ClinVar
BRCA1_000063
rs80356880
1/13
-
Nuur Athirah Binti Mohd Daud
+/., -/., -/?
3
3
c.114G>A
-
r.(=)
p.(=)
-
Benign,
ClinVar
g.43115746C>T
-
E Thirthagiri et al. (2008)
dbSNP
,
Gaik Theng Toh et al. (2008)
,
dbSNP
,
ClinVar
,
1 more item
BRCA1_000038
rs1800062
1/37
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
2
3
c.115T>C
C39R
r.(?)
p.(Cys39Arg)
frameshift
ClinVar
g.43115745A>G
C39R
P S Ng et al. (2016)
,
dbSNP
,
ClinVar
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000044
rs80357164
1/2, 2/490
-
Nuur Athirah Binti Mohd Daud
+/.
3
IVS3
c.134+1G>T
-
r.spl?
p.?
-
Pathogenic/Likely pathogenic,
ClinVar
g.43115725C>A
-
Ava Kwong et al.(2016)
,
Timothy R Rebbeck et al.(2018)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000086
rs80358043
1/1726, 1/72 families
Mutation type: Intervening sequence
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
3
3
c.134+2del
-
r.spl?
p.?
-
Pathogenic,
ClinVar
g.43115724del
-
Gaik Theng Toh et al. (2008)
,
dbSNP
,
ClinVar
,
Timothy R Rebbeck et al.(2018)
BRCA1_000045
rs273897657
1/37, 1/72 families
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
2
IVS3
c.134+2delT
-
r.spl?
p.?
-
Pathogenic
g.43115724delA
-
Ava Kwong et al.(2016)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000087
rs273897657
1/1726
Mutation type: Intervening sequence
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
4
4i, IVS4
c.135-1G>C
-
r.spl?
p.?
-
Pathogenic,
ClinVar
g.43106534C>G
-
Ava Kwong et al.(2016)
,
Hanis Nazihah Hasmad et al. (2016)
,
dbSNP
,
ClinVar
,
2 more items
BRCA1_000084
rs80358158
1/359, 1/5, 3/72 families
Mutation type: Intervening sequence
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
-
c.150del
-
r.(?)
p.(Lys50Asnfs*19)
-
Pathogenic
g.43106518del
-
Timothy R Rebbeck et al.(2018)
BRCA1_000111
rs273897662
1/72 families
-
Nur Aisyah Athirah
+/.
2
5
c.150delA
-
r.(?)
p.(Lys50Asnfs*19)
-
Pathogenic,
ClinVar
g.43106518delT
-
Ava Kwong et al.(2016)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000125
rs273897662
1/359
Mutattion type: Deletion - frameshift
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
./.
1
5
c.181T>C
-
r.(?)
p.(Cys61Arg)
-
ClinVar
g.43106487A>G
-
P S Ng et al. (2016)
,
dbSNP
,
ClinVar
BRCA1_000069
rs28897672
1/5
-
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.182G>A
-
r.(?)
p.(Cys61Tyr)
-
ClinVar
g.43106486C>T
-
Xiaohong R Yang et al. (2017)
,
dbSNP
,
ClinVar
BRCA1_000062
rs80357093
1/13
-
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.190T>C
-
r.(?)
p.(Cys64Arg)
missense
Pathogenic​
g.43106478A>G
-
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000092
rs80357064
1/1762
VUS (variants of unknown significance.)
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.211A>G
-
r.(?)
p.(Arg71Gly)
-
ClinVar
g.43106457T>C
-
Xiaohong R Yang et al. (2017)
,
dbSNP
,
ClinVar
BRCA1_000061
rs80357382
1/13
-
Nuur Athirah Binti Mohd Daud
+/?
1
-
c.212+1G>T
-
r.spl?
p.?
-
ClinVar
g.43106455C>A
-
E Thirthagiri et al. (2008)
dbSNP
BRCA1_000018
rs80358042
-
-
MyHVP
+/., +/?
4
IVS5
c.213-12A>G
-
r.(=)
p.(=)
-
Pathogenic,
ClinVar
g.43104968T>C
-
E Thirthagiri et al. (2008)
dbSNP
,
Ava Kwong et al.(2016)
,
Timothy R Rebbeck et al.(2018)
,
1 more item
BRCA1_000019
rs80358163
1/1726, 1/72 families
Mutation type: Intervening sequence
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
-
c.216C>G
-
r.(?)
p.(Ser72Arg)
missense
Uncertain significance
g.43104953G>C
-
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000107
rs80356967
1/490
VUS (variants of unknown significance)
Nuur Athirah Binti Mohd Daud
-?/?
1
7
c.372C>A
-
r.(=)
p.(=)
-
ClinVar
g.43104191G>T
-
E Thirthagiri et al. (2008)
dbSNP
BRCA1_000020
rs273900715
-
-
MyHVP
+/.
2
-
c.470_471del
-
r.(?)
p.(Ser157*)
-
Pathogenic,
ClinVar
g.43099851_43099852del
-
Peter Choon Eng Kang et al. (2014)
,
dbSNP
,
ClinVar
,
Timothy R Rebbeck et al.(2018)
BRCA1_000052
rs80357887
2/14, 3/72 families
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/., +/?
3
8
c.470_471delCT
-
r.(?)
p.(Ser157*)
-
Pathogenic,
ClinVar
g.43099851_43099852delAG
-
E Thirthagiri et al. (2008)
dbSNP
,
Ava Kwong et al.(2016)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000009
rs80357887
2/1726
Mutation type: Deletion - frameshif
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
3
8
c.505C>T
-
r.(?)
p.(Gln169*)
-
Pathogenic,
ClinVar
g.43099817G>A
-
Ava Kwong et al.(2016)
,
Timothy R Rebbeck et al.(2018)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000094
rs80357133
1/490, 1/72 families
Mutattion type: Nonsense
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
-
c.533T>A
-
r.(?)
p.(Val178Asp)
missense
Uncertain significance
g.43099789A>T
-
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000106
rs876660085
1/490
VUS (variants of unknown significance)
Nuur Athirah Binti Mohd Daud
-/.
2
-
c.548-58del
IVS8-57delT
r.(=)
p.(=)
-
ClinVar
g.43097347del
IVS8-57delT
P Balraj et al. (2002)
,
dbSNP
,
ClinVar
BRCA1_000085
rs8176144
1/7, 1/8
-
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.548-57del
-
r.(=)
p.(=)
-
ClinVar
g.43097346del
-
P Balraj et al. (2002)
,
dbSNP
,
ClinVar
BRCA1_000042
rs1567804371
16/30
-
Nuur Athirah Binti Mohd Daud
-/., -/?
2
-, 9
c.571G>A
-
r.(?)
p.(Val191Ile)
-
ClinVar
g.43097266C>T
-
E Thirthagiri et al. (2008)
dbSNP
,
Kah Nyin Lai et al. (2017)
,
dbSNP
,
ClinVar
BRCA1_000021
rs80357090
11/1464
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
+/., ?/.
2
10
c.594-2A>G
-
r.spl?
p.?
-
ClinVar
g.43095924T>C
-
P S Ng et al. (2016)
,
dbSNP
,
ClinVar
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000068
rs80358033
1/1726, 1/5
-
Nuur Athirah Binti Mohd Daud
+/.
2
11
c.686_687delCT
-
r.(?)
p.(Ser229*)
-
ClinVar
g.43094844_43094845delAG
-
P S Ng et al. (2016)
dbSNP
,
Wei Xiong Wen et al. (2018)
BRCA1_000043
rs746766787
1/2, 1/490
-
Nuur Athirah Binti Mohd Daud
+/.
3
11
c.726delT
-
r.(?)
p.(Ser242Argfs*5)
-
-
g.43094805delA
-
P S Ng et al. (2016)
,
Wei Xiong Wen et al. (2018)
BRCA1_000065
-
1/2, 1/359, 1/490
-
Nuur Athirah Binti Mohd Daud
?/?
1
11
c.754C>T
-
r.(?)
p.(Arg252Cys)
-
ClinVar
g.43094777G>A
-
E Thirthagiri et al. (2008)
dbSNP
BRCA1_000022
rs273902786
-
-
MyHVP
-/?
1
11
c.795T>C
-
r.(=)
p.(=)
-
ClinVar
g.43094736A>G
-
E Thirthagiri et al. (2008)
dbSNP
BRCA1_000023
rs201441987
-
-
MyHVP
-/.
1
-
c.823G>A
-
r.(?)
p.(Gly275Ser)
-
ClinVar
g.43094708C>T
-
Kah Nyin Lai et al. (2017)
,
dbSNP
,
ClinVar
BRCA1_000047
rs8176153
2/1464
-
Nuur Athirah Binti Mohd Daud
+/.
2
11
c.829_830del
-
r.(?)
p.(Asn277Tyrfs*9)
-
Pathogenic,
ClinVar
g.43094701_43094702del
-
Hanis Nazihah Hasmad et al. (2016)
,
dbSNP
,
ClinVar
,
Timothy R Rebbeck et al.(2018)
BRCA1_000082
rs886040323
1/5, 1/72 families
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
11
c.829_830delAA
-
r.(?)
p.(Asn277Tyrfs*9)
-
Pathogenic
g.43094701_43094702delTT
-
Ava Kwong et al.(2016)
BRCA1_000126
rs886040323
-
Mutation type: Deletion - frameshif
Nur Aisyah Athirah
+/.
3
11
c.850C>T
-
r.(?)
p.(Gln284*)
-
Pathogenic,
ClinVar
g.43094681G>A
-
Ava Kwong et al.(2016)
,
Timothy R Rebbeck et al.(2018)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000123
rs397509330
1/359, 1/72 families
Mutation type: Nonsense
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
-
c.964del
-
r.(?)
p.(Ala322Leufs*19)
-
Pathogenic
g.43094567del
-
Timothy R Rebbeck et al.(2018)
BRCA1_000124
rs273903794
1/72 families
-
Nur Aisyah Athirah
+/.
1
11
c.964delG
-
r.(?)
p.(Ala322Leufs*19)
-
Pathogenic
g.43094567delC
-
Ava Kwong et al.(2016)
BRCA1_000128
rs273903794
-
Mutation type: Deletion - frameshif
Nur Aisyah Athirah
+/.
2
-
c.981_982del
-
r.(?)
p.(Cys328*)
-
Pathogenic,
ClinVar
g.43094549_43094550del
-
Peter Choon Eng Kang et al. (2014)
,
dbSNP
,
ClinVar
,
Timothy R Rebbeck et al.(2018)
BRCA1_000053
rs80357772
1/14, 1/72 families
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/., +/?
3
11
c.981_982delAT
-
r.(?)
p.(Cys328*)
-
Pathogenic,
ClinVar
g.43094549_43094550delAT
-
E Thirthagiri et al. (2008)
dbSNP
,
Ava Kwong et al.(2016)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000010
rs80357772
1/1726
Mutation type: Deletion - frameshift
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
-/.
1
-
c.1036C>T
-
r.(?)
p.(Pro346Ser)
-
ClinVar
g.43094495G>A
-
Kah Nyin Lai et al. (2017)
,
dbSNP
,
ClinVar
BRCA1_000048
rs80357015
2/1464
-
Nuur Athirah Binti Mohd Daud
+/.
3
11
c.1054G>T
-
r.(?)
p.(Glu352*)
-
Pathogenic,
ClinVar
g.43094477C>A
-
Ava Kwong et al.(2016)
,
Timothy R Rebbeck et al.(2018)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000109
rs80357472
1/359, 1/72 families
Mutation type: Nonsense
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
-
c.1104del
-
r.(?)
p.(Asp369Metfs*5)
-
Pathogenic
g.43094427del
-
Timothy R Rebbeck et al.(2018)
BRCA1_000110
rs886039927
1/72 families
-
Nur Aisyah Athirah
+/.
2
11
c.1104delA
-
r.(?)
p.(Asp369Metfs*5)
-
Pathogenic
g.43094427delT
-
Ava Kwong et al.(2016)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000088
rs886039927
1/1726
Mutation type: Deletion - frameshif
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
-
c.1140dup
-
r.(?)
p.(Lys381Glufs*3)
-
ClinVar
g.43094391dup
-
Xiaohong R Yang et al. (2017)
,
dbSNP
,
ClinVar
BRCA1_000060
rs876659327
1/13
-
Nuur Athirah Binti Mohd Daud
+/.
4
-, 11
c.1204G>T
-
r.(?)
p.(Glu402*)
-
Pathogenic,
ClinVar
g.43094327C>A
-
Ava Kwong et al.(2016)
,
Peter Choon Eng Kang et al. (2014)
,
dbSNP
,
ClinVar
,
2 more items
BRCA1_000050
rs273897655
2/490, 2/7, 2/72 families
Mutation type: Nonsense
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
11
c.1492dupC
-
r.(?)
p.(Leu498Profs*4)
-
-
g.43094039dupG
-
Hanis Nazihah Hasmad et al. (2016)
BRCA1_000076
-
1/7
-
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.1504_1508delTTAAA
-
r.(?)
p.(Leu502Alafs*2)
-
ClinVar
g.43094023_43094027delTTTAA
-
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000089
rs80357888
1/1726
-
Nuur Athirah Binti Mohd Daud
-?/.
1
11
c.1873C>T
-
r.(=)
p.(=)
-
ClinVar
g.43093658G>A
-
Gaik Theng Toh et al. (2008)
,
dbSNP
,
ClinVar
BRCA1_000046
rs769044421
1/37
-
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.1881_1884del
-
r.(?)
p.(Ser628Glufs*3)
-
Pathogenic
g.43093647_43093650del
-
Timothy R Rebbeck et al.(2018)
BRCA1_000112
rs80357567
1/72 families
-
Nur Aisyah Athirah
+/.
1
-
c.1961dup
-
r.(?)
p.(Tyr655Valfs*18)
-
Pathogenic
g.43093570dup
-
Timothy R Rebbeck et al.(2018)
BRCA1_000113
rs80357522
1/72 families
-
Nur Aisyah Athirah
+/.
2
11
c.1996del
-
r.(?)
p.(Leu666Tyrfs*35)
-
Pathogenic,
ClinVar
g.43093535del
-
Hanis Nazihah Hasmad et al. (2016)
,
dbSNP
,
ClinVar
,
Timothy R Rebbeck et al.(2018)
BRCA1_000071
rs80357922
1/5, 1/72 families
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
11
c.1996delC
-
r.(?)
p.(Leu666Tyrfs*35)
-
Pathogenic
g.43093535delG
-
Ava Kwong et al.(2016)
BRCA1_000130
rs80357922
-
Mutation type: Deletion - frameshif
Nur Aisyah Athirah
+/.
3
11
c.2059C>T
-
r.(?)
p.(Gln687*)
-
Pathogenic,
ClinVar
g.43093472G>A
-
Ava Kwong et al.(2016)
,
Hanis Nazihah Hasmad et al. (2016)
,
dbSNP
,
ClinVar
,
1 more item
BRCA1_000072
rs273898674
1/5, 1/72 families
Mutation type: Nonsense
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
2
-
c.2070_2071del
-
r.(?)
p.(Arg691Thrfs*2)
-
Pathogenic,
ClinVar
g.43093460_43093461del
-
Timothy R Rebbeck et al.(2018)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000095
rs80357688
1/490, 1/72 families
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/., -/., -/?
3
11
c.2077G>A
-
r.(?)
p.(Asp693Asn)
-
Benign,
ClinVar
g.43093454C>T
-
E Thirthagiri et al. (2008)
,
dbSNP
,
ClinVar
,
Gaik Theng Toh et al. (2008)
,
dbSNP
,
ClinVar
,
1 more item
BRCA1_000039
rs4986850
1/37
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/., -/., -/?
7
-, 11
c.2082C>T
2201 C>T
r.(=)
p.(=)
-
Benign,
ClinVar
g.43093449G>A
2201 C>T
E Thirthagiri et al. (2008)
,
dbSNP
,
ClinVar
,
Gaik Theng Toh et al. (2008)
,
dbSNP
,
ClinVar
,
2 more items
BRCA1_000040
rs1799949
1/8, 10/37, 15/37, 3/37, 4/30
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/., -/., -/?
4
-, 11
c.2286A>T
-
r.(?)
p.(Arg762Ser)
-
Benign,
ClinVar
,
ClinVar
g.43093245T>A
-
E Thirthagiri et al. (2008)
,
dbSNP
,
ClinVar
,
Gaik Theng Toh et al. (2008)
,
dbSNP
,
ClinVar
,
2 more items
BRCA1_000025
rs273898682
1/1463, 1/37
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/., -/., -/?
8
-, 11
c.2311T>C
2430 T>C, 2430T>C
r.(=)
p.(=)
-
Benign,
ClinVar
g.43093220A>G
2430 T>C, 2430T>C
E Thirthagiri et al. (2008)
,
dbSNP
,
ClinVar
,
Gaik Theng Toh et al. (2008)
,
dbSNP
,
ClinVar
,
2 more items
BRCA1_000041
rs16940
1/7, 1/8, 10/37, 15/37, 18/30, 3/37
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/., -/., -/?
4
11
c.2566T>C
c.2685T>C, Y856H
r.(?)
p.(Tyr856His)
-
Benign,
ClinVar
g.43092965A>G
-
E Thirthagiri et al. (2008)
,
dbSNP
,
ClinVar
,
A S Khoo et al.(2000)
,
Mohamed Saleem et al.(2020)
,
1 more item
BRCA1_000026
rs80356892
1/37
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/., -/.
7
-, 11
c.2612C>T
2731C>T
r.(?)
p.(Pro871Leu)
-
ClinVar
g.43092919G>A
2731C>T
Gaik Theng Toh et al. (2008)
,
dbSNP
,
ClinVar
,
P Balraj et al. (2002)
,
dbSNP
,
ClinVar
,
1 more item
BRCA1_000001
rs799917
1/7, 1/8, 10/37, 15/37, 19/30, 3/37
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
+/.
6
11
c.2635G>T
-
r.(?)
p.(Glu879*)
-
Pathogenic,
ClinVar
g.43092896C>A
-
Ava Kwong et al.(2016)
,
Hanis Nazihah Hasmad et al. (2016)
,
dbSNP
,
ClinVar
,
3 more items
BRCA1_000077
rs80357251
1/490, 1/7, 2/1726, 5/72 families
Mutation type: Nonsense
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
./., ?/?
2
-, 11
c.2726A>T
-
r.(?)
p.(Asn909Ile)
-
ClinVar
g.43092805T>A
-
E Thirthagiri et al. (2008)
,
dbSNP
,
ClinVar
,
Kah Nyin Lai et al. (2017)
,
dbSNP
,
ClinVar
BRCA1_000027
rs80357127
4/1462
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
+/.
2
11
c.2726dup
-
r.(?)
p.(Asn909Lysfs*6)
-
Pathogenic,
ClinVar
g.43092805dup
-
Hanis Nazihah Hasmad et al. (2016)
,
dbSNP
,
ClinVar
,
Timothy R Rebbeck et al.(2018)
BRCA1_000073
rs80357614
1/5, 3/72 families
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/., +/?
2
11
c.2726dupA
-
r.(?)
p.(Asn909Lysfs*6)
-
Pathogenic,
ClinVar
g.43092805dupT
-
E Thirthagiri et al. (2008)
,
dbSNP
,
ClinVar
,
Ava Kwong et al.(2016)
BRCA1_000036
rs80357614
-
Mutation type: Insertion - frameshift
MyHVP
,
Nur Aisyah Athirah
?/?
1
11
c.2739T>A
-
r.(?)
p.(Asn913Lys)
-
ClinVar
g.43092792A>T
-
E Thirthagiri et al. (2008)
,
dbSNP
,
ClinVar
BRCA1_000028
rs273899688
-
-
MyHVP
+/.
1
11
c.2754G>T
E879X
r.(?)
p.(Lys918Asn)
-
Uncertain significance
g.43092777C>A
-
A S Khoo et al.(2000)
BRCA1_000131
rs398122668
-
-
Nur Aisyah Athirah
+/., -?/., -?/?
3
11
c.2931A>G
-
r.(=)
p.(=)
-
Likely benign,
ClinVar
,
ClinVar
g.43092600T>C
-
E Thirthagiri et al. (2008)
,
dbSNP
,
ClinVar
,
Gaik Theng Toh et al. (2008)
,
dbSNP
,
ClinVar
,
1 more item
BRCA1_000029
rs273899691
1/37
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
-
c.3008_3009del
-
r.(?)
p.(Phe1003*)
-
ClinVar
g.43092522_43092523del
-
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000096
rs80357617
1/490
-
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.3075_3076insGGAAAACTTTGAGGAACATTCAATGTCACCTGAAAGAGAAATGGGAAATGAGATCATTCCAAGTACAGTGAGCACA
-
r.(?)
p.(Ile1026Glyfs*4)
-
Pathogenic
g.43092455_43092456insTGTGCTCACTGTACTTGGAATGATCTCATTTCCCATTTCTCTTTCAGGTGACATTGAATGTTCCTCAAAGTTTTCC
-
Timothy R Rebbeck et al.(2018)
BRCA1_000114
rs886040095
1/72 families
-
Nur Aisyah Athirah
+/., -/.
8
-, 11
c.3113A>G
3232A>G
r.(?)
p.(Glu1038Gly)
-
Benign,
ClinVar
,
ClinVar
g.43092418T>C
3232A>G
Gaik Theng Toh et al. (2008)
,
dbSNP
,
ClinVar
,
Mohamed Saleem et al.(2018)
,
2 more items
BRCA1_000002
rs16941
1/7, 1/8, 10/37, 14/30, 15/37, 3/37
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
-
c.3214del
-
r.(?)
p.(Leu1072*)
-
ClinVar
g.43092317del
-
Xiaohong R Yang et al. (2017)
,
dbSNP
,
ClinVar
BRCA1_000059
rs80357923
2/13
-
Nuur Athirah Binti Mohd Daud
+/.
2
-
c.3228_3229del
-
r.(?)
p.(Gly1077Alafs*8)
-
Pathogenic,
ClinVar
g.43092302_43092303del
-
Timothy R Rebbeck et al.(2018)
,
Xiaohong R Yang et al. (2017)
,
dbSNP
,
ClinVar
BRCA1_000058
rs80357635
1/13, 1/72 families
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
-
c.3288_3289del
-
r.(?)
p.(Leu1098Serfs*4)
-
ClinVar
g.43092242_43092243del
-
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000097
rs80357686
1/490
-
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.3323_3326del
-
r.(?)
p.(Ile1108Lysfs*8)
-
ClinVar
​
g.43092205_43092208del
-
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000098
rs80357763
1/490
-
Nuur Athirah Binti Mohd Daud
+/.
2
11
c.3333del
-
r.(?)
p.(Glu1112Asnfs*5)
-
Pathogenic,
ClinVar
g.43092198del
-
Hanis Nazihah Hasmad et al. (2016)
,
dbSNP
,
ClinVar
,
Timothy R Rebbeck et al.(2018)
BRCA1_000081
rs80357966
1/7, 1/72 families
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
11
c.3333delA
-
r.(?)
p.(Glu1112Asnfs*5)
-
Pathogenic
g.43092198delT
-
Ava Kwong et al.(2016)
BRCA1_000129
rs80357966
-
Mutation type: Deletion - frameshift
Nur Aisyah Athirah
+/.
1
-
c.3424delG
-
r.(?)
p.(Ala1142Hisfs*13)
-
ClinVar
g.43092107delC
-
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000090
rs1555587718
1/1726
-
Nuur Athirah Binti Mohd Daud
?/?
1
11
c.3518G>A
-
r.(?)
p.(Ser1173Asn)
-
ClinVar
g.43092013C>T
-
E Thirthagiri et al. (2008)
,
dbSNP
,
ClinVar
BRCA1_000011
rs746949187
-
-
MyHVP
+/., -/.
8
-, 11
c.3548A>G
3667A>G
r.(?)
p.(Lys1183Arg)
-
Benign,
ClinVar
,
ClinVar
g.43091983T>C
3667A>G
Gaik Theng Toh et al. (2008)
,
dbSNP
,
ClinVar
,
Mohamed Saleem et al.(2018)
,
2 more items
BRCA1_000003
rs16942
1/7, 1/8, 10/37, 15/37, 19/30, 3/37
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
2
-
c.3607C>T
-
r.(?)
p.(Arg1203*)
-
ClinVar
,
ClinVar
g.43091924G>A
-
Wei Xiong Wen et al. (2018)
,
dbSNP
,
(OMIM 0012)
,
ClinVar
,
1 more item
BRCA1_000057
rs273897655
,
rs62625308
1/13, 1/359
-
Nuur Athirah Binti Mohd Daud
?/.
1
-
c.3625T>G
-
r.(?)
p.(Leu1209Val)
-
ClinVar
g.43091906A>C
-
Kah Nyin Lai et al. (2017)
,
dbSNP
,
ClinVar
BRCA1_000049
rs273900711
2/1461
-
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.3649T>C
-
r.(?)
p.(Ser1217Pro)
missense
Uncertain significance
g.43091882A>G
-
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000093
rs273900712
2/1726
VUS (variants of unknown significance.)
Nuur Athirah Binti Mohd Daud
+/.
3
11
c.3661G>T
-
r.(?)
p.(Glu1221*)
-
Pathogenic,
ClinVar
g.43091870C>A
-
Ava Kwong et al.(2016)
,
Hanis Nazihah Hasmad et al. (2016)
,
dbSNP
,
ClinVar
,
1 more item
BRCA1_000078
rs80357310
1/7, 1/72 families
Mutation type: Nonsense
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
./., ?/?
2
-, 11
c.3662A>C
-
r.(?)
p.(Glu1221Ala)
-
ClinVar
g.43091869T>G
-
E Thirthagiri et al. (2008)
dbSNP
,
Kah Nyin Lai et al. (2017)
,
dbSNP
,
ClinVar
BRCA1_000030
rs273900713
3/1464
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.3724A>G
-
r.(?)
p.(Thr1242Ala)
missense
Benign
g.43091807T>C
-
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000102
rs80357037
1/490
VUS (variants of unknown significance)
Nuur Athirah Binti Mohd Daud
+/.
2
11
c.3770_3771del
-
r.(?)
p.(Glu1257Glyfs*9)
-
Pathogenic,
ClinVar
g.43091760_43091761del
-
P S Ng et al. (2016)
,
dbSNP
,
ClinVar
,
Timothy R Rebbeck et al.(2018)
BRCA1_000067
rs80357579
2/5, 3/72 families
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/., +/?
3
11
c.3770_3771delAG
-
r.(?)
p.(Glu1257Glyfs*9)
-
Pathogenic,
ClinVar
g.43091760_43091761delCT
-
E Thirthagiri et al. (2008)
dbSNP
,
Ava Kwong et al.(2016)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000013
rs80357310
,
rs80357579
2/1726
Mutation type: Deletion - frameshift
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
?/?
1
11
c.3803A>G
-
r.(?)
p.(Asn1268Ser)
-
ClinVar
g.43091728T>C
-
E Thirthagiri et al. (2008)
dbSNP
BRCA1_000031
rs273900716
-
-
MyHVP
+/.
1
-
c.3856del
-
r.(?)
p.(Ser1286Valfs*21)
-
Pathogenic
g.43091675del
-
Timothy R Rebbeck et al.(2018)
BRCA1_000115
rs80357855
1/72 families
-
Nur Aisyah Athirah
+/.
2
11
c.3856delA
-
r.(?)
p.(Ser1286Valfs*21)
-
Pathogenic,
ClinVar
g.43091675delT
-
Ava Kwong et al.(2016)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000099
rs80357855
1/490
Mutation type: Deletion - frameshift
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
-
c.3869_3870del
-
r.(?)
p.(Lys1290Metfs*4)
-
ClinVar
g.43091661_43091662del
-
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA1_000100
rs80357918
1/490
-
Nuur Athirah Binti Mohd Daud
+/.
3
11
c.3893C>A
-
r.(?)
p.(Ser1298*)
-
Pathogenic,
ClinVar
g.43091638G>T
-
Ava Kwong et al.(2016)
,
Hanis Nazihah Hasmad et al. (2016)
,
dbSNP
,
ClinVar
,
1 more item
BRCA1_000079
rs80357440
1/7, 1/72 families
Mutation type: Nonsense
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
10 per page
25 per page
50 per page
100 per page
250 per page
500 per page
1000 per page
Legend
How to query
« First
Prev
1
2
Next
Last »
Powered by
LOVD v.3.0
Build 29
LOVD software ©2004-2023
Leiden University Medical Center