Malaysian Node of the Human Variome Project Database
BRCA1 (BRCA1, DNA repair associated)
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MyHVP
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Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Template
: Template(s) used to detect the sequence variant; DNA = genomic DNA, RNA = RNA (cDNA).
All options:
DNA
RNA = RNA (cDNA)
Protein
? = unknown
Technique
: Technique(s) used to identify the sequence variant.
All options:
? = Unknown
arrayCGH = array for Comparative Genomic Hybridisation
arraySEQ = array for resequencing
arraySNP = array for SNP typing
arrayCNV = array for Copy Number Variation (SNP and CNV probes)
BESS = Base Excision Sequence Scanning
CMC = Chemical Mismatch Cleavage
CSCE = Conformation Sensitive Capillary Electrophoresis
DGGE = Denaturing-Gradient Gel-Electrophoresis
DHPLC = Denaturing High-Performance Liquid Chromatography
DOVAM = Detection Of Virtually All Mutations (SSCA variant)
ddF = dideoxy Fingerprinting
DSCA = Double-Strand DNA Conformation Analysis
EMC = Enzymatic Mismatch Cleavage
HD = HeteroDuplex analysis
MCA = high-resolution Melting Curve Analysis (hrMCA)
IHC = Immuno-Histo-Chemistry
MAPH = Multiplex Amplifiable Probe Hybridisation
MLPA = Multiplex Ligation-dependent Probe Amplification
SEQ-NG = Next-Generation Sequencing
SEQ-NG-H = Next-Generation Sequencing - Helicos
SEQ-NG-I = Next-Generation Sequencing - Illumina/Solexa
SEQ-NG-R = Next-Generation Sequencing - Roche/454
SEQ-NG-S = Next-Generation Sequencing - SOLiD
Northern = Northern blotting
PCR = Polymerase Chain Reaction
PCRdig = PCR + restriction enzyme digestion
PCRlr = PCR, long-range
PCRm = PCR, multiplex
PCRq = PCR, quantitative
PAGE = Poly-Acrylamide Gel-Electrophoresis
PTT = Protein Truncation Test
PFGE = Pulsed-Field Gel-Electrophoresis (+Southern)
RT-PCR = Reverse Transcription and PCR
SEQ = SEQuencing
SBE = Single Base Extension
SSCA = Single-Strand DNA Conformation polymorphism Analysis (SSCP)
SSCAf = SSCA, fluorescent (SSCP)
Southern = Southern blotting
TaqMan = TaqMan assay
Western = Western Blotting
How to query this table
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Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
29 entries on 1 page. Showing entries 1 - 29.
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Legend
How to query
Screening ID
Individual ID
Template
Technique
Variants found
Owner
0000000001
00000001
DNA
?
1
MyHVP
0000000038
00000026
DNA
?
1
MyHVP
0000000108
00000093
DNA
PCR
8
Nuur Athirah Binti Mohd Daud
0000000109
00000094
DNA
PCR
8
Nuur Athirah Binti Mohd Daud
0000000110
00000095
DNA
PCR
13
Nuur Athirah Binti Mohd Daud
0000000111
00000096
DNA
PCR
7
Nuur Athirah Binti Mohd Daud
0000000112
00000097
DNA
?
7
Nuur Athirah Binti Mohd Daud
0000000113
00000098
DNA
?
2
Nuur Athirah Binti Mohd Daud
0000000114
00000099
DNA
?
3
Nuur Athirah Binti Mohd Daud
0000000115
00000100
DNA
?
1
Nuur Athirah Binti Mohd Daud
0000000119
00000104
DNA
MLPA;SEQ
9
Nuur Athirah Binti Mohd Daud
0000000121
00000106
DNA
SEQ
2
Nuur Athirah Binti Mohd Daud
0000000122
00000107
DNA
SEQ
2
Nuur Athirah Binti Mohd Daud
0000000123
00000108
DNA
SEQ
4
Nuur Athirah Binti Mohd Daud
0000000126
00000111
DNA
PCRm;SEQ
5
Nuur Athirah Binti Mohd Daud
0000000127
00000112
DNA
PCRm;SEQ
7
Nuur Athirah Binti Mohd Daud
0000000128
00000113
DNA
PCRm;SEQ
4
Nuur Athirah Binti Mohd Daud
0000000277
00000262
DNA
PCR
8
Nuur Athirah Binti Mohd Daud
0000000278
00000263
DNA
PCR
7
Nuur Athirah Binti Mohd Daud
0000000419
00000406
DNA
MLPA;SEQ-NG-I
20
Nuur Athirah Binti Mohd Daud
0000000423
00000408
DNA
MLPA;SEQ-NG-I
20
Nuur Athirah Binti Mohd Daud
0000000424
00000409
DNA
SEQ
2
Nur Aisyah Athirah
0000000427
00000411
DNA
MLPA;SEQ-NG-I
14
Nuur Athirah Binti Mohd Daud
0000000559
00000512
DNA
SEQ
48
Nur Aisyah Athirah
0000000591
00000543
DNA
SEQ
11
Nur Aisyah Athirah
0000000592
00000544
DNA
SEQ
14
Nur Aisyah Athirah
0000000594
00000546
DNA
SEQ
9
Nur Aisyah Athirah
0000000633
00000575
DNA
SEQ
2
Nur Aisyah Athirah
0000000656
00000591
DNA
PCR
11
Nur Aisyah Athirah
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