Malaysian Node of the Human Variome Project Database
BRCA2 (BRCA2, DNA repair associated)
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MyHVP
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Unique variants in the BRCA2 gene
The variants shown are described using the NM_000059.3 transcript reference sequence.
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Effect
: The variant's effect on the function of the gene/protein, displayed in the format 'R/C'. R is the value reported by the source (publication, submitter) and this classification may vary between records. C is the value concluded by the curator. Note that in some database the curator uses Summary records to give details on the classification of the variant.Values used: '+' indicating the variant affects function, '+?' probably affects function, '-' does not affect function, '-?' probably does not affect function, '?' effect unknown, '.' effect was not classified.
Reported
: The number of times this variant has been reported in the database.
Exon
: Number of exon/intron containing variant; 2 = exon 2, 12i = intron 12, 2i_7i = exons 3 to 7, 8i_9 = border intron 8/exon 9.
DNA change (cDNA)
: Description of variant at DNA level, based on a coding DNA reference sequence (following HGVS recommendations); e.g. c.123C>T, c.123_145del, c.123_126dup.
Published as
: Variant as originally reported (e.g. 521delT); listed only when different from "DNA change". Variants seen in animal models, tested in vitro, predicted from RNA analysis, etc. are described between brackets like c.(456C>G).
RNA change
: Description of variant at RNA level (following HGVS recommendations).
r.123c>u
r.? = unknown
r.(?) = RNA not analysed but probably transcribed copy of DNA variant
r.spl? = RNA not analysed but variant probably affects splicing
r.(spl?) = RNA not analysed but variant may affect splicing
r.0? = change expected to abolish transcription
Protein
: Description of variant at protein level (following HGVS recommendations).
p.(Arg345Pro) = change predicted from DNA (RNA not analysed)
p.Arg345Pro = change derived from RNA analysis
p.? = unknown effect
p.0? = probably no protein produced
GVS function
: The functional annotation of this position from the Genome Variation Server.
All options:
intergenic
near-gene-5
utr-5
start-lost
coding
non-coding-exon
coding-near-splice
non-coding-exon-near-splice
coding-synonymous
coding-synonymous-near-splice
codingComplex
codingComplex-near-splice
frameshift
frameshift-near-splice
missense
missense-near-splice
splice-5
splice
non-coding-intron-near-splice
intron
splice-3
stop-gained
stop-gained-near-splice
stop-lost
stop-lost-near-splice
utr-3
near-gene-3
Clinical classification
: Clinical classification of variant
DNA change (genomic) (hg38)
: Description of variant at DNA level, based on the genomic DNA reference sequence (following HGVS recommendations).
g.12345678C>T
g.12345678_12345890del
g.12345678_12345890dup
Published as
: Variant as originally reported (e.g. 521delT); listed only when different from "DNA change". Variants seen in animal models, tested in vitro, predicted from RNA analysis, etc. are described between brackets like c.(456C>G).
Reference
: Reference to publication describing the variant, including links to OMIM (when available), PubMed or or other source, e.g. "den Dunnen ASHG2003 P2346".
DB-ID
: Database ID of variant, grouping multiple observations of the same variant together, starting with the HGNC gene symbol, followed by an underscore (_) and a six digit number (e.g. DMD_012345). _000000 is used for variants where DNA was not analysed (change predicted from RNA analysis), variants seen in animal models or variants not seen in humans but functionally tested in vitro.
dbSNP ID
: The dbSNP ID.
Frequency
: Frequency in which the variant was found; e.g 5/760 chromosomes (in 5 of 760 chromosomes tested), 1/33 patients (in 1 of 33 patients analysed in study), 0.05 controls (in 5% of control cases tested).
Variant remarks
: Remarks regarding the variant described, e.g. germline mosaicism in mother, 345 kb deletion, muscle RNA analysed, not in 200 control chromosomes tested, on founder haplotype, etc.
How to query this table
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Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
170 entries on 2 pages. Showing entries 1 - 100.
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Effect
Reported
Exon
DNA change (cDNA)
Published as
RNA change
Protein
GVS function
Clinical classification
DNA change (genomic) (hg38)
Published as
Reference
DB-ID
dbSNP ID
Frequency
Variant remarks
Owner
?/.
1
2
c.-32142499G>A
-
r.(=)
p.(=)
-
-
g.173208G>A
-
Rahimah Ahmad et al. (2013)
,
dbSNP
,
(OMIM 0174)
BRCA2_000096
rs281864846
3/26
-
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.-39-1_-39del
c.-39-1_-39delGA
r.spl?
p.?
-
Likely pathogenic
g.32316421_32316422del
c.-39-1_-39delGA
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA2_000140
rs758732038
1/1726
-
Nuur Athirah Binti Mohd Daud
-/.
2
-
c.68-7T>A
-
r.(=)
p.(=)
-
ClinVar
,
ClinVar
g.32319070T>A
-
E Thirthagiri et al. (2008)
,
dbSNP
,
ClinVar
,
Kah Nyin Lai et al. (2017)
,
dbSNP
,
ClinVar
BRCA2_000039
rs81002830
4/2076
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
./., ?/.
2
-, 3
c.215A>G
-
r.(?)
p.(Asn72Ser)
-
ClinVar
g.32319224A>G
-
E Thirthagiri et al. (2008)
,
dbSNP
,
ClinVar
,
Kah Nyin Lai et al. (2017)
,
dbSNP
,
ClinVar
BRCA2_000013
rs276174818
1/1215
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
+/.
2
-
c.262_263del
-
r.(?)
p.(Leu88Alafs*12)
-
Pathogenic,
ClinVar
g.32319271_32319272del
-
Peter Choon Eng Kang et al. (2014)
,
dbSNP
,
ClinVar
,
Timothy R Rebbeck et al.(2018)
BRCA2_000067
rs276174825
5/8, 8/64 families
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
4
13, 3
c.262_263delCT
-
r.(?)
p.(Leu88Alafs*12)
frameshift
pathogenic,
ClinVar
g.32319271_32319272delCT
-
Ava Kwong et al.(2016)
,
E Thirthagiri et al. (2008)
,
dbSNP
,
ClinVar
,
Wen WX, et al.(2018)
,
1 more item
BRCA2_000001
rs276174825
7/16, 7/490
Mutation type: Deletion - frameshift
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
-/.
1
10
c.317-1875G>A
-
r.(=)
p.(=)
-
ClinVar
g.32323201G>A
-
E Thirthagiri et al. (2008)
,
dbSNP
,
ClinVar
BRCA2_000018
rs55953893
-
-
MyHVP
-/.
2
-, 5
c.440A>G
-
r.(?)
p.(Gln147Arg)
-
ClinVar
,
ClinVar
g.32326115A>G
-
E Thirthagiri et al. (2008)
,
dbSNP
,
ClinVar
,
Kah Nyin Lai et al. (2017)
,
dbSNP
,
ClinVar
BRCA2_000014
rs80358674
12/1218
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
-/.
1
-
c.516+18T>C
-
r.(=)
p.(=)
-
ClinVar
g.32326300T>C
-
Kah Nyin Lai et al. (2017)
,
dbSNP
,
ClinVar
BRCA2_000081
rs81002834
8/1207
-
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.582G>A
-
r.(?)
p.(Trp194*)
-
ClinVar
g.32326564G>A
-
Xiaohong R Yang et al. (2017)
,
dbSNP
,
ClinVar
BRCA2_000059
rs80358810
1/15
-
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.631+1G>A
-
r.spl?
p.?
-
Pathogenic
g.32326614G>A
-
Wei Xiong Wen et al. (2018)
,
dbSNP
,
(OMIM 0033)
,
ClinVar
BRCA2_000141
rs81002897
1/1726
-
Nuur Athirah Binti Mohd Daud
-/.
1
-
c.631+541T>C
-
r.(=)
p.(=)
-
ClinVar
g.32327154T>C
-
E Thirthagiri et al.(2008)
dbSNP
ClinVar
BRCA2_000044
rs115974024
-
-
MyHVP
+/.
1
-
c.755_758del
-
r.(?)
p.(Asp252Valfs*24)
-
ClinVar
g.32330992_32330995del
-
Xiaohong R Yang et al. (2017)
,
dbSNP
,
ClinVar
BRCA2_000060
rs80359659
1/15
-
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.774_775del
-
r.(?)
p.(Glu260Serfs*15)
-
Pathogenic
g.32331011_32331012del
-
Timothy R Rebbeck et al.(2018)
BRCA2_000124
rs75096777
1/64 families
-
Nur Aisyah Athirah
+/.
2
9
c.774_775delAA
-
r.(?)
p.(Glu260Serfs*15)
-
Pathogenic
g.32331011_32331012delAA
-
Ava Kwong et al.(2016)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA2_000131
rs75096777
1/1726
Mutation type: Deletion - frameshift
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
3
10
c.809C>G
-
r.(?)
p.(Ser270*)
-
Pathogenic
g.32332287C>G
-
Ava Kwong et al.(2016)
,
Timothy R Rebbeck et al.(2018)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA2_000125
rs276174902
2/1726, 2/64 families
Mutation type: Nonsense
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/., -/.
2
10
c.865A>C
c.856A>C
r.(?)
p.(Asn289His)
-
Benign,
ClinVar
g.32332343A>C
-
Mohamed Saleem et al.(2018)
,
Toh GT et al.(2008)
,
dbSNP
,
ClinVar
BRCA2_000046
rs766173
-
-
MyHVP
,
Nur Aisyah Athirah
+/., ./., ?/.
3
-, 10
c.943T>A
-
r.(?)
p.(Cys315Ser)
-
Benign/Likely benign,
ClinVar
,
ClinVar
g.32332421T>A
-
E Thirthagiri et al. (2008)
,
dbSNP
,
ClinVar
,
Kah Nyin Lai et al. (2017)
,
dbSNP
,
ClinVar
,
1 more item
BRCA2_000041
rs79483201
18/2055
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
3
10
c.956dupA
-
r.(?)
p.(Asn319Lysfs*8)
-
Pathogenic,
ClinVar
g.32332434dupA
-
Ava Kwong et al.(2016)
,
E Thirthagiri et al. (2008)
,
dbSNP
,
ClinVar
,
1 more item
BRCA2_000002
rs80359770
1/1726
Mutation type: Insertion - frameshift
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
10
c.956_957insA
-
r.(?)
p.(Asn319Lysfs*8)
-
-
g.32332434_32332435insA
-
Hanis Nazihah Hasmad et al. (2016)
BRCA2_000093
-
1/3
-
Nuur Athirah Binti Mohd Daud
+/.
1
10
c.1114A>C
-
r.(?)
p.(Asn372His)
-
Benign
g.32332592A>C
-
Mohamed Saleem et al.(2018)
BRCA2_000138
rs144848
-
-
Nur Aisyah Athirah
-/.
1
10
c.1275A>G
-
r.(=)
p.(=)
-
ClinVar
g.32332753A>G
-
E Thirthagiri et al. (2008)
,
dbSNP
,
ClinVar
BRCA2_000015
rs34355306
-
-
MyHVP
?/.
1
10
c.1342C>T
-
r.(?)
p.(Arg448Cys)
-
ClinVar
g.32332820C>T
-
Toh GT et al.(2008)
,
dbSNP
,
ClinVar
BRCA2_000047
rs80358422
-
-
MyHVP
-/.
1
10
c.1362A>G
-
r.(=)
p.(=)
-
ClinVar
g.32332840A>G
-
ClinVar
ClinVar
E Thirthagiri et al. (2008)
,
dbSNP
,
ClinVar
BRCA2_000042
rs55919657
-
-
MyHVP
-/.
1
10
c.1365A>G
-
r.(=)
p.(=)
-
ClinVar
g.32332843A>G
-
Toh GT et al.(2008)
,
dbSNP
,
ClinVar
BRCA2_000048
rs1801439
-
-
MyHVP
-/.
1
10
c.1644G>A
-
r.(=)
p.(=)
-
ClinVar
g.32333122G>A
-
E Thirthagiri et al. (2008)
,
dbSNP
,
ClinVar
BRCA2_000017
rs55986646
-
-
MyHVP
+/.
1
-
c.1763_1766del
-
r.(?)
p.(Asn588Serfs*25)
-
ClinVar
g.32333241_32333244del
-
Xiaohong R Yang et al. (2017)
,
dbSNP
,
ClinVar
BRCA2_000061
rs80359303
1/15
-
Nuur Athirah Binti Mohd Daud
+/.
2
-
c.1773_1776del
c.1773_1776delTTAT
r.(?)
p.(Ile591Metfs*22)
-
Pathogenic
g.32333251_32333254del
c.1773_1776delTTAT
Timothy R Rebbeck et al.(2018)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA2_000097
rs80359304
1/1726, 1/64 families
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
2
10
c.1773_1776delTTAT
-
r.(?)
p.(Ile591Metfs*22)
-
Pathogenic,
ClinVar
g.32333251_32333254delTTAT
-
Ava Kwong et al.(2016)
,
E Thirthagiri et al. (2008)
,
dbSNP
,
ClinVar
BRCA2_000003
rs80359304
-
Mutation type: Deletion - frameshift
MyHVP
,
Nur Aisyah Athirah
+/.
1
10
c.1813dupA
-
r.(?)
p.(Ile605Asnfs*11)
-
Pathogenic
g.32333291dupA
-
Ava Kwong et al.(2016)
BRCA2_000129
rs80359306
-
Mutation type: Insertion - frameshift
Nur Aisyah Athirah
?/.
1
-
c.1825C>G
-
r.(?)
p.(Gln609Glu)
-
ClinVar
g.32333303C>G
-
Kah Nyin Lai et al. (2017)
,
dbSNP
,
ClinVar
BRCA2_000070
rs80358472
2/1218
-
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.1855C>T
-
r.(?)
p.(Gln619*)
-
Pathogenic
g.32333333C>T
-
Timothy R Rebbeck et al.(2018)
BRCA2_000098
rs80358476
1/64 families
-
Nur Aisyah Athirah
+/.
1
-
c.1888dup
-
r.(?)
p.(Thr630Asnfs*6)
-
ClinVar
g.32333366dup
-
Xiaohong R Yang et al. (2017)
,
dbSNP
,
ClinVar
BRCA2_000062
rs80359314
1/15
-
Nuur Athirah Binti Mohd Daud
./.
1
-
c.2186T>C
-
r.(?)
p.(Ile729Thr)
-
ClinVar
g.32336541T>C
-
Kah Nyin Lai et al. (2017)
,
dbSNP
,
ClinVar
BRCA2_000071
rs431825296
1/1213
-
Nuur Athirah Binti Mohd Daud
+/., -/.
2
11
c.2229T>C
-
r.(=)
p.(=)
-
Benign,
ClinVar
g.32336584T>C
-
Mohamed Saleem et al.(2018)
,
Toh GT et al.(2008)
,
dbSNP
,
ClinVar
BRCA2_000049
rs1801499
-
-
MyHVP
,
Nur Aisyah Athirah
+/.
1
-
c.2442del
-
r.(?)
p.(Met815Trpfs*10)
-
ClinVar
g.32336797del
-
Xiaohong R Yang et al. (2017)
,
dbSNP
,
ClinVar
BRCA2_000063
rs397507627
1/15
-
Nuur Athirah Binti Mohd Daud
+/.
2
-
c.2471_2476del
2471_2476delTAAATG
r.(?)
p.(Leu824*)
-
Pathogenic
g.32336826_32336831del
2471_2476delTAAATG
Timothy R Rebbeck et al.(2018)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA2_000099
rs276174823
1/490, 1/64 families
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
2
11
c.2471_2476delTAAATG
-
r.(?)
p.(Leu824*)
-
Pathogenic,
ClinVar
g.32336826_32336831delTAAATG
-
dbSNP
E Thirthagiri et al. (2008)
,
dbSNP
,
ClinVar
,
Ava Kwong et al.(2016)
BRCA2_000004
rs276174823
,
rs886040427
-
Mutation type: Deletion - frameshift
MyHVP
,
Nur Aisyah Athirah
+/.
2
-
c.2595del
2595delA
r.(?)
p.(Glu866Lysfs*8)
-
Pathogenic
g.32336950del
2595delA
Timothy R Rebbeck et al.(2018)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA2_000100
rs483353111
1/1726, 1/64 families
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
-
c.2612C>A
-
r.(?)
p.(Ser871*)
-
Pathogenic
g.32336967C>A
-
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA2_000142
rs397507634
1/1726
-
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.2636_2637del
-
r.(?)
p.(Ser879*)
-
Pathogenic
g.32336991_32336992del
-
Timothy R Rebbeck et al.(2018)
BRCA2_000101
rs276174826
1/64 families
-
Nur Aisyah Athirah
+/.
2
11
c.2636_2637delCT
-
r.(?)
p.(Ser879*)
-
Pathogenic,
ClinVar
g.32336991_32336992delCT
-
Ava Kwong et al.(2016)
,
E Thirthagiri et al. (2008)
,
dbSNP
,
ClinVar
BRCA2_000005
rs276174826
-
Mutation type: Deletion - frameshift
MyHVP
,
Nur Aisyah Athirah
+/.
4
-, 11
c.2808_2811del
2808_2811delACAA
r.(?)
p.(Ala938Profs*21)
-
Pathogenic,
ClinVar
g.32337163_32337166del
2808_2811delACAA
Hanis Nazihah Hasmad et al. (2016)
,
dbSNP
,
(OMIM 0016)
,
ClinVar
,
Timothy R Rebbeck et al.(2018)
,
2 more items
BRCA2_000068
rs80359351
1/2, 2/1726, 2/19, 3/64 families
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
2
11
c.2808_2811delACAA
-
r.(?)
p.(Ala938Profs*21)
-
Pathogenic
g.32337163_32337166delACAA
-
Ava Kwong et al.(2016)
BRCA2_000132
rs80359351
-
Mutation type: Deletion - frameshift
Nur Aisyah Athirah
+/.
3
11
c.2830A>T
-
r.(?)
p.(Lys944*)
-
Pathogenic
g.32337185A>T
-
Ava Kwong et al.(2016)
,
Timothy R Rebbeck et al.(2018)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA2_000102
rs80358533
1/1726, 1/64 families
Mutation type: Nonsense
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
?/.
1
11
c.2860_2862delGAG
-
r.(?)
p.(Glu954del)
-
ClinVar
g.32337215_32337217delGAG
-
Toh GT et al.(2008)
dbSNP
,
ClinVar
BRCA2_000045
rs80359360
-
-
MyHVP
+/., -/.
2
11
c.2971A>G
-
r.(?)
p.(Asn991Asp)
-
Benign,
ClinVar
g.32337326A>G
-
Mohamed Saleem et al.(2018)
,
Toh GT et al.(2008)
,
dbSNP
,
ClinVar
BRCA2_000050
rs1799944
-
-
MyHVP
,
Nur Aisyah Athirah
+/.
6
-, 11
c.3109C>T
-
r.(?)
p.(Gln1037*)
-
Pathogenic,
ClinVar
g.32337464C>T
-
Ava Kwong et al.(2016)
,
P S Ng et al. (2016)
,
dbSNP
,
ClinVar
,
Timothy R Rebbeck et al.(2018)
,
3 more items
BRCA2_000054
rs80358557
1/15, 1/1726, 2/8, 3/64 families
Mutation type: Nonsense
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
-
c.3391A>G
-
r.(?)
p.(Arg1131Gly)
missense
Uncertain significance​
g.32337746A>G
-
Wei Xiong Wen et al. (2018)
,
ClinVar
BRCA2_000156
-
1/1726
VUS (variants of unknown significance)
Nuur Athirah Binti Mohd Daud
+/., -/.
2
11
c.3396A>G
-
r.(=)
p.(=)
-
Benign,
ClinVar
g.32337751A>G
-
Mohamed Saleem et al.(2018)
,
Toh GT et al.(2008)
dbSNP
BRCA2_000051
rs1801406
-
-
MyHVP
,
Nur Aisyah Athirah
-/.
1
11
c.3420T>C
-
r.(=)
p.(=)
-
ClinVar
g.32337775T>C
-
E Thirthagiri et al. (2008)
dbSNP
BRCA2_000021
rs118093942
-
-
MyHVP
+/., ./., ?/.
3
-, 11
c.3445A>G
-
r.(?)
p.(Met1149Val)
-
Uncertain significance,
ClinVar
g.32337800A>G
-
E Thirthagiri et al. (2008)
dbSNP
,
Kah Nyin Lai et al. (2017)
,
dbSNP
,
ClinVar
,
1 more item
BRCA2_000022
rs80358589
7/1215
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
-
c.3569G>T
-
r.(?)
p.(Arg1190Leu)
missense
Uncertain significance​
g.32337924G>T
-
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA2_000161
rs80358605
1/490
VUS (variants of unknown significance)
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.3599_3600del
-
r.(?)
p.(Cys1200*)
-
Pathogenic
g.32337954_32337955del
-
Timothy R Rebbeck et al.(2018)
BRCA2_000103
rs80359391
1/64 families
-
Nur Aisyah Athirah
+/.
1
11
c.3599_3600delGT
-
r.(?)
p.(Cys1200*)
-
Pathogenic
g.32337954_32337955delGT
-
Ava Kwong et al.(2016)
BRCA2_000133
rs80359391
-
Mutation type: Deletion - frameshift
Nur Aisyah Athirah
-?/.
1
11
c.3675A>G
-
r.(=)
p.(=)
-
ClinVar
g.32338030A>G
-
E Thirthagiri et al. (2008)
dbSNP
BRCA2_000023
rs276174835
-
-
MyHVP
+/.
1
-
c.3680_3681del
3680_3681delTG
r.(?)
p.(Leu1227Glnfs*5)
frameshift
Pathogenic
g.32338035_32338036del
3680_3681delTG
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA2_000159
rs80359395
1/490
-
Nuur Athirah Binti Mohd Daud
?/.
1
11
c.3782C>G
-
r.(?)
p.(Ser1261Cys)
-
ClinVar
g.32338137C>G
-
E Thirthagiri et al. (2008)
dbSNP
BRCA2_000024
rs276174836
-
-
MyHVP
+/., -/.
2
11
c.3807T>C
-
r.(=)
p.(=)
-
Benign,
ClinVar
g.32338162T>C
-
Mohamed Saleem et al.(2018)
,
Toh GT et al.(2008)
dbSNP
BRCA2_000052
rs543304
-
-
MyHVP
,
Nur Aisyah Athirah
+/.
1
11
c.3821delA
-
r.(?)
p.(Lys1274Argfs*2)
-
-
g.32338176delA
-
Hanis Nazihah Hasmad et al. (2016)
BRCA2_000090
-
1/2
-
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.3847_3848del
3847_3848delGT
r.(?)
p.(Val1283Lysfs*2)
-
Pathogenic
g.32338202_32338203del
3847_3848delGT
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA2_000143
rs80359405
1/1726
-
Nuur Athirah Binti Mohd Daud
+/.
2
-
c.3865_3868del
3865_3868delAAAT
r.(?)
p.(Lys1289Alafs*3)
frameshift
Pathogenic
g.32338220_32338223del
3865_3868delAAAT
Timothy R Rebbeck et al.(2018)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA2_000104
rs80359412
1/359, 1/64 families
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
11
c.3865_3868delAAAT
-
r.(?)
p.(Lys1289Alafs*3)
-
Pathogenic
g.32338220_32338223delAAAT
-
Ava Kwong et al.(2016)
BRCA2_000130
rs80359412
-
Mutation type: Deletion - frameshift
Nur Aisyah Athirah
+/.
1
-
c.3922G>T
-
r.(?)
p.(Glu1308*)
-
Pathogenic
g.32338277G>T
-
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA2_000144
rs80358638
1/1726
-
Nuur Athirah Binti Mohd Daud
+/.
2
-
c.3957_3958del
3957_3958delTG
r.(?)
p.(Asn1319Lysfs*3)
-
Pathogenic
g.32338312_32338313del
3957_3958delTG
Timothy R Rebbeck et al.(2018)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA2_000105
rs886040504
1/1726, 1/64 families
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
11
c.3957_3958delTG
-
r.(?)
p.(Asn1319Lysfs*3)
-
ClinVar
g.32338312_32338313delTG
-
P S Ng et al. (2016)
,
dbSNP
,
ClinVar
BRCA2_000083
rs886040504
1/8
-
Nuur Athirah Binti Mohd Daud
+/.
2
-
c.4003G>T
-
r.(?)
p.(Glu1335*)
-
Pathogenic
g.32338358G>T
-
Timothy R Rebbeck et al.(2018)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA2_000106
rs747070579
1/359, 1/64 families
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
-
c.4014_4015insGG
-
r.(?)
p.(Ser1339Glyfs*36)
-
Pathogenic
g.32338369_32338370insGG
-
Timothy R Rebbeck et al.(2018)
BRCA2_000107
rs276174839
1/64 families
-
Nur Aisyah Athirah
+/.
2
-
c.4037_4038del
4037_4038delCT
r.(?)
p.(Thr1346Serfs*5)
frameshift
Pathogenic
g.32338392_32338393del
4037_4038delCT
Timothy R Rebbeck et al.(2018)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA2_000108
rs80359421
2/490, 2/64 families
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
2
11
c.4037_4038delCT
-
r.(?)
p.(Thr1346Serfs*5)
-
Pathogenic,
ClinVar
g.32338392_32338393delCT
-
Ava Kwong et al.(2016)
,
E Thirthagiri et al. (2008)
dbSNP
BRCA2_000006
rs80359421
-
Mutation type: Deletion - frameshift
MyHVP
,
Nur Aisyah Athirah
./.
1
-
c.4376A>G
-
r.(?)
p.(Asn1459Ser)
-
ClinVar
g.32338731A>G
-
Kah Nyin Lai et al. (2017)
,
dbSNP
,
ClinVar
BRCA2_000072
rs117187202
5/2087
-
Nuur Athirah Binti Mohd Daud
+/.
2
-
c.4467_4474delinsTGTTTTT
-
r.(?)
p.(Lys1489Asnfs*15)
-
Pathogenic
g.32338822_32338829delinsTGTTTTT
-
Timothy R Rebbeck et al.(2018)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA2_000109
rs886040533
1/1726, 1/64 families
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
2
-
c.4525C>T
-
r.(?)
p.(Gln1509*)
-
Pathogenic
g.32338880C>T
-
Timothy R Rebbeck et al.(2018)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA2_000110
rs80358683
1/1726, 1/64 families
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
11
c.4578A>G
-
r.(=)
p.(=)
-
Benign
g.32338933A>G
-
Mohamed Saleem et al.(2018)
BRCA2_000139
rs202022822
-
-
Nur Aisyah Athirah
+/.
1
11
c.4587dupG
-
r.(?)
p.(Lys1530Glufs*4)
-
ClinVar
g.32338942dupG
-
Toh GT et al.(2008)
dbSNP
BRCA2_000055
rs745456776
-
-
MyHVP
+/-
1
-
c.4779A>C
-
r.(?)
p.(Glu1593Asp)
-
ClinVar
g.32339134A>C
-
Kah Nyin Lai et al. (2017)
,
dbSNP
,
ClinVar
BRCA2_000073
rs80358703
6/2088
-
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.4799del
-
r.(?)
p.(Asn1600Metfs*17)
-
Pathogenic
g.32339154del
-
Timothy R Rebbeck et al.(2018)
BRCA2_000111
rs886040550
1/64 families
-
Nur Aisyah Athirah
+/.
1
11
c.4799delA
-
r.(?)
p.(Asn1600Metfs*17)
-
ClinVar
g.32339154delA
-
P S Ng et al. (2016)
,
dbSNP
,
ClinVar
BRCA2_000084
rs886040550
1/8
-
Nuur Athirah Binti Mohd Daud
?/.
1
11
c.4806A>G
-
r.(=)
p.(=)
-
-
g.32339161A>G
-
E Thirthagiri et al. (2008)
BRCA2_000043
rs41258306
-
-
MyHVP
+/.
1
-
c.4872_4873delTG
-
r.(?)
p.(Glu1625Lysfs*13)
-
-
g.32339227_32339228delTG
-
Wei Xiong Wen et al. (2018)
BRCA2_000145
-
1/1726
-
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.5047C>T
-
r.(?)
p.(Gln1683*)
-
Pathogenic
g.32339402C>T
-
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA2_000166
rs1555284044
1/359
-
Nuur Athirah Binti Mohd Daud
+/.
2
11
c.5073dup
-
r.(?)
p.(Trp1692Metfs*3)
-
Pathogenic,
ClinVar
g.32339428dup
-
Hanis Nazihah Hasmad et al. (2016)
,
dbSNP
,
ClinVar
,
Timothy R Rebbeck et al.(2018)
BRCA2_000094
rs80359479
1/3, 3/64 families
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
2
11
c.5073dupA
-
r.(?)
p.(Trp1692Metfs*3)
-
Pathogenic
g.32339428dupA
-
Ava Kwong et al.(2016)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA2_000134
rs80359479
1/1726
Mutation type: Insertion - frameshift
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
-
c.5164_5165del
-
r.(?)
p.(Ser1722Tyrfs*4)
-
Pathogenic
g.32339519_32339520del
-
Timothy R Rebbeck et al.(2018)
BRCA2_000112
rs80359490
1/64 families
-
Nur Aisyah Athirah
+/.
1
11
c.5164_5165delAG
-
r.(?)
p.(Ser1722Tyrfs*4)
-
ClinVar
g.32339519_32339520delAG
-
P S Ng et al. (2016)
,
dbSNP
,
ClinVar
BRCA2_000085
rs80359490
1/8
-
Nuur Athirah Binti Mohd Daud
?/.
1
11
c.5167A>C
-
r.(?)
p.(Thr1723Pro)
-
ClinVar
g.32339522A>C
-
E Thirthagiri et al. (2008)
dbSNP
BRCA2_000025
rs80358742
-
-
MyHVP
./.
1
-
c.5167A>G
-
r.(?)
p.(Thr1723Ala)
-
ClinVar
g.32339522A>G
-
Kah Nyin Lai et al. (2017)
,
dbSNP
,
ClinVar
BRCA2_000074
rs80358742
1/1214
-
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.5213_5216del
5213_5216delCTTA
r.(?)
p.(Thr1738Ilefs*2)
frameshift
Pathogenic
g.32339568_32339571del
5213_5216delCTTA
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA2_000167
rs80359493
1/359
-
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.5238dup
-
r.(?)
p.(Asn1747*)
-
Pathogenic
g.32339593dup
-
Timothy R Rebbeck et al.(2018)
BRCA2_000113
rs80359499
1/64 families
-
Nur Aisyah Athirah
./.
1
11
c.5301_5302insA
-
r.(?)
p.(Leu1768Thrfs*2)
-
-
g.32339656_32339657insA
-
Toh GT et al.(2008)
BRCA2_000056
-
-
-
MyHVP
+/., -/.
3
-, 11
c.5312G>A
-
r.(?)
p.(Gly1771Asp)
-
Benign,
ClinVar
g.32339667G>A
-
E Thirthagiri et al. (2008)
dbSNP
,
Kah Nyin Lai et al. (2017)
,
dbSNP
,
ClinVar
,
1 more item
BRCA2_000026
rs80358755
1/2054
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
-
c.5353_5354del
-
r.(?)
p.(Thr1785*)
-
ClinVar
g.32339708_32339709del
-
Xiaohong R Yang et al. (2017)
,
dbSNP
,
ClinVar
BRCA2_000064
rs397507780
3/15
-
Nuur Athirah Binti Mohd Daud
+/.
3
-
c.5576_5579del
5576_5579delTTAA
r.(?)
p.(Ile1859Lysfs*3)
-
Pathogenic,
ClinVar
g.32339931_32339934del
5576_5579delTTAA
Timothy R Rebbeck et al.(2018)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
,
1 more item
BRCA2_000065
rs80359520
1/15, 1/1726, 1/64 families
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
11
c.5576_5579delTTAA
-
r.(?)
p.(Ile1859Lysfs*3)
-
Pathogenic
g.32339931_32339934delTTAA
-
Ava Kwong et al.(2016)
BRCA2_000135
rs80359520
-
Mutation type: Deletion - frameshift
Nur Aisyah Athirah
?/.
1
11
c.5635G>A
-
r.(?)
p.(Glu1879Lys)
-
ClinVar
g.32339990G>A
-
E Thirthagiri et al. (2008)
dbSNP
BRCA2_000027
rs55996097
-
-
MyHVP
+/.
3
11
c.5645C>A
-
r.(?)
p.(Ser1882*)
-
Pathogenic
g.32340000C>A
-
Ava Kwong et al.(2016)
,
Timothy R Rebbeck et al.(2018)
,
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA2_000114
rs80358785
1/1726, 1/64 families
Mutation type: Nonsense
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
-
c.5681dupA
-
r.(?)
p.(Tyr1894*)
-
Pathogenic
g.32340036dupA
-
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA2_000146
rs80359527
1/1726
-
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.5727_5728insG
-
r.(?)
p.(Asn1910Glufs*2)
frameshift
Pathogenic
g.32340082_32340083insG
-
Wei Xiong Wen et al. (2018)
,
dbSNP
,
ClinVar
BRCA2_000168
rs1593906350
1/359
-
Nuur Athirah Binti Mohd Daud
-/.
2
-, 11
c.5785A>G
-
r.(?)
p.(Ile1929Val)
-
ClinVar
g.32340140A>G
-
E Thirthagiri et al. (2008)
dbSNP
,
Kah Nyin Lai et al. (2017)
,
dbSNP
,
ClinVar
BRCA2_000028
rs79538375
20/1213
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.5967dup
-
r.(?)
p.(Asp1990Argfs*13)
-
Pathogenic
g.32340322dup
-
Timothy R Rebbeck et al.(2018)
BRCA2_000115
rs276174865
1/64 families
-
Nur Aisyah Athirah
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