Malaysian Node of the Human Variome Project Database
HBB (hemoglobin subunit beta)
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MyHVP
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Unique variants in the HBB gene
The variants shown are described using the
NM_000518.4
NM_000518.5
transcript reference sequence.
Legend
Please note that a short description of a certain column can be displayed when you move your mouse cursor over the column's header and hold it still. Below, a more detailed description is shown per column.
Effect
: The variant's effect on the function of the gene/protein, displayed in the format 'R/C'. R is the value reported by the source (publication, submitter) and this classification may vary between records. C is the value concluded by the curator. Note that in some database the curator uses Summary records to give details on the classification of the variant.Values used: '+' indicating the variant affects function, '+?' probably affects function, '-' does not affect function, '-?' probably does not affect function, '?' effect unknown, '.' effect was not classified.
Reported
: The number of times this variant has been reported in the database.
Exon
: Number of exon/intron containing variant; 2 = exon 2, 12i = intron 12, 2i_7i = exons 3 to 7, 8i_9 = border intron 8/exon 9.
DNA change (cDNA)
: Description of variant at DNA level, based on a coding DNA reference sequence (following HGVS recommendations); e.g. c.123C>T, c.123_145del, c.123_126dup.
Published as
: Variant as originally reported (e.g. 521delT); listed only when different from "DNA change". Variants seen in animal models, tested in vitro, predicted from RNA analysis, etc. are described between brackets like c.(456C>G).
RNA change
: Description of variant at RNA level (following HGVS recommendations).
r.123c>u
r.? = unknown
r.(?) = RNA not analysed but probably transcribed copy of DNA variant
r.spl? = RNA not analysed but variant probably affects splicing
r.(spl?) = RNA not analysed but variant may affect splicing
r.0? = change expected to abolish transcription
Protein
: Description of variant at protein level (following HGVS recommendations).
p.(Arg345Pro) = change predicted from DNA (RNA not analysed)
p.Arg345Pro = change derived from RNA analysis
p.? = unknown effect
p.0? = probably no protein produced
GVS function
: The functional annotation of this position from the Genome Variation Server.
All options:
intergenic
near-gene-5
utr-5
start-lost
coding
non-coding-exon
coding-near-splice
non-coding-exon-near-splice
coding-synonymous
coding-synonymous-near-splice
codingComplex
codingComplex-near-splice
frameshift
frameshift-near-splice
missense
missense-near-splice
splice-5
splice
non-coding-intron-near-splice
intron
splice-3
stop-gained
stop-gained-near-splice
stop-lost
stop-lost-near-splice
utr-3
near-gene-3
Clinical classification
: Clinical classification of variant
DNA change (genomic) (hg38)
: Description of variant at DNA level, based on the genomic DNA reference sequence (following HGVS recommendations).
g.12345678C>T
g.12345678_12345890del
g.12345678_12345890dup
Published as
: Variant as originally reported (e.g. 521delT); listed only when different from "DNA change". Variants seen in animal models, tested in vitro, predicted from RNA analysis, etc. are described between brackets like c.(456C>G).
Reference
: Reference to publication describing the variant, including links to OMIM (when available), PubMed or or other source, e.g. "den Dunnen ASHG2003 P2346".
DB-ID
: Database ID of variant, grouping multiple observations of the same variant together, starting with the HGNC gene symbol, followed by an underscore (_) and a six digit number (e.g. DMD_012345). _000000 is used for variants where DNA was not analysed (change predicted from RNA analysis), variants seen in animal models or variants not seen in humans but functionally tested in vitro.
dbSNP ID
: The dbSNP ID.
Frequency
: Frequency in which the variant was found; e.g 5/760 chromosomes (in 5 of 760 chromosomes tested), 1/33 patients (in 1 of 33 patients analysed in study), 0.05 controls (in 5% of control cases tested).
Variant remarks
: Remarks regarding the variant described, e.g. germline mosaicism in mother, 345 kb deletion, muscle RNA analysed, not in 200 control chromosomes tested, on founder haplotype, etc.
How to query this table
All list views have search fields which can be used to search data. You can search for a complete word or you can search for a part of a search term. If you enclose two or more words in double quotes, LOVD will search for the combination of those words only exactly in the order you specify. Note that search terms are case-insensitive and that wildcards such as * are treated as normal text! For all options, like "and", "or", and "not" searches, or searching for prefixes or suffixes, see the table below.
Operator
Column type
Example
Matches
Text
Arg
all entries containing 'Arg'
space
Text
Arg Ser
all entries containing 'Arg' and 'Ser'
|
Text
Arg|Ser
all entries containing 'Arg' or 'Ser'
!
Text
!fs
all entries not containing 'fs'
^
Text
^p.(Arg
all entries beginning with 'p.(Arg'
$
Text
Ser)$
all entries ending with 'Ser)'
=""
Text
=""
all entries with this field empty
=""
Text
="p.0"
all entries exactly matching 'p.0'
!=""
Text
!=""
all entries with this field not empty
!=""
Text
!="p.0"
all entries not exactly matching 'p.0?'
combination
Text
*|Ter !fs
all entries containing '*' or 'Ter' but not containing 'fs'
Date
2020
all entries matching the year 2020
|
Date
2020-03|2020-04
all entries matching March or April, 2020
!
Date
!2020-03
all entries not matching March, 2020
<
Date
<2020
all entries before the year 2020
<=
Date
<=2020-06
all entries in or before June, 2020
>
Date
>2020-06
all entries after June, 2020
>=
Date
>=2020-06-15
all entries on or after June 15th, 2020
combination
Date
2019|2020 <2020-03
all entries in 2019 or 2020, and before March, 2020
Numeric
23
all entries exactly matching 23
|
Numeric
23|24
all entries exactly matching 23 or 24
!
Numeric
!23
all entries not exactly matching 23
<
Numeric
<23
all entries lower than 23
<=
Numeric
<=23
all entries lower than, or equal to, 23
>
Numeric
>23
all entries higher than 23
>=
Numeric
>=23
all entries higher than, or equal to, 23
combination
Numeric
>=20 <30 !23
all entries with values from 20 to 29, but not equal to 23
Some more advanced examples:
Example
Matches
Asian
all entries containing 'Asian', 'asian', including 'Caucasian', 'caucasian', etc.
Asian !Caucasian
all entries containing 'Asian' but not containing 'Caucasian'
Asian|African !Caucasian
all entries containing 'Asian' or 'African', but not containing 'Caucasian'
"South Asian"
all entries containing 'South Asian', but not containing 'South East Asian'
To sort on a certain column, click on the column header or on the arrows. If that column is already selected to sort on, the sort order will be swapped. The column currently sorted on has a darker blue background color than the other columns. The up and down arrows next to the column name indicate the current sorting direction. When sorting on any field other than the default, LOVD will sort secondarily on the default sort column.
67 entries on 1 page. Showing entries 1 - 67.
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Legend
How to query
Effect
Reported
Exon
DNA change (cDNA)
Published as
RNA change
Protein
GVS function
Clinical classification
DNA change (genomic) (hg38)
Published as
Reference
DB-ID
dbSNP ID
Frequency
Variant remarks
Owner
./.
1
-
c.-138C>T
-88 (C>T)
r.(=)
p.(=)
-
ClinVar
g.5227159G>A
-88 (C>T)
E George et al. (1992)
,
dbSNP
,
(OMIM 0372)
HBB_000031
rs33944208
1/7
-
Nuur Athirah Binti Mohd Daud
+?/.
1
-
c.-126C>T
-76 C>T
r.(=)
p.(=)
-
-
g.5227147G>A
-76 C>T
HBB_000052
-
2
-
Nuur Athirah Binti Mohd Daud
+?/.
1
-
c.-123A>C
-73 A>C
r.(=)
p.(=)
-
-
g.5227144T>G
-73 A>C
HBB_000049
-
3
-
Nuur Athirah Binti Mohd Daud
+?/.
1
-
c.-123A>G
-73 A>G
r.(=)
p.(=)
-
-
g.5227144T>C
-73 A>G
HBB_000048
-
1
-
Nuur Athirah Binti Mohd Daud
+?/.
1
-
c.-113A>G
-63 A>G
r.(=)
p.(=)
-
-
g.5227134T>C
-63 A>G
HBB_000061
-
1
-
Nuur Athirah Binti Mohd Daud
./.
1
-
c.-80T>A
-30 (T>A)
r.(=)
p.(=)
-
ClinVar
g.5227101A>T
-30 (T>A)
M Sivalingam et al. (2012)
,
dbSNP
,
(OMIM 0377)
,
ClinVar
HBB_000035
rs33980857
1/396
-
Nuur Athirah Binti Mohd Daud
+/., -/.
13
-
c.-79A>G
-29, -29 (A>G)
r.(=)
p.(=)
-
Pathogenic,
ClinVar
,
ClinVar
,
ClinVar
g.5227100T>C
-29, -29 (A>G)
dbSNP
,
dbSNP
,
(OMIM 0379)
,
ClinVar
,
E George et al. (1992)
,
dbSNP
,
(OMIM 0379)
,
ClinVar
,
8 more items
HBB_000009
rs34598529
,
rs35906110
1/279, 1/396, 1/76, 1/91, 2/169, 2/274, 2/34, 3/322
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
,
Nurul Atika Binti Musa
,
NUR ALIA TASNIM BINTI MAT DAUD
+/., ./., ?/.
19
-, =
c.-78A>G
-28 (A>G), 28 (A>G)
r.(=)
p.(=)
-
ClinVar
g.5227099T>C
-28 (A>G), 28 (A>G)
E George et al. (1992)
,
dbSNP
,
(OMIM 0381)
,
ClinVar
,
George et al. (1993)
{dbSNPrs33931746},
14 more items
HBB_000005
rs33931746
1/12, 1/40, 1/46, 11/279, 13/396, 14/151, 14/154, 14/91, 2/12, 2/169, 2/24, 21/322, 3/141, 3/504, 4/34,
3 more items
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nurul Atika Binti Musa
+/., ./.
9
-
c.-50A>C
CAP +1 (A>C)
r.(=)
p.(=)
-
ClinVar
,
ClinVar
g.5227071T>G
CAP +1 (A>C)
E George et al. (1992)
,
dbSNP
,
(OMIM 0387)
,
Hassan et al. (2013)
dbSNP
,
Hassan S et al. 2013
dbSNP
,
5 more items
HBB_000008
rs34305195
1/2, 1/322, 1/46, 1/76, 2/140, 2/141, 2/169, 4/297, 4/396
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.-24C>G
CAP +27 (C>G)
r.(=)
p.(=)
-
-
g.5227045G>C
CAP +27 (C>G)
HBB_000050
rs374054030
1
-
Nuur Athirah Binti Mohd Daud
+/.
5
1
c.2T>G
ATG>AGG, Init CD ATG>AGG
r.?
p.?
-
ClinVar
g.5227020A>C
ATG>AGG, Init CD ATG>AGG
dbSNP
,
M Sivalingam et al. (2012)
,
dbSNP
,
(OMIM 0344)
,
ClinVar
,
3 more items
HBB_000036
rs33941849
1/279, 1/396, 1/91, 2/322
Nuur Athirah Binti Mohd Daud
,
Nurul Atika Binti Musa
+/.
1
1
c.20A>T
HbS
r.(?)
p.(Glu7Val)
-
ClinVar
g.5227002T>A
-
Lie-Injo et al
HBB_000069
-
-
-
MyHVP Team
+/.
8
1
c.27dupG
CD 8/9 (+G), CD 8/9 +AGAA
r.(?)
p.(Ser10Valfs*14)
-
ClinVar
g.5226995dupC
CD 8/9 (+G), CD 8/9 +AGAA
dbSNP
,
(OMIM 0325)
,
Hassan et al. (2013)
dbSNP
,
Lai Kuan Teh et al. (2014)
,
dbSNP
,
(OMIM 0325)
,
ClinVar
,
4 more items
HBB_000022
rs35699606
0, 1/274, 1/40, 1/46, 2/504, 2/7, 4/140, 4/279
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
+/.
4
1
c.27_28insAGAA
CD 8/9, CD 8/9 +AGAA
r.(?)
p.(Ser10Argfs*15)
-
ClinVar
g.5226994_5226995insTTCT
CD 8/9, CD 8/9 +AGAA
M Sivalingam et al. (2012)
,
ClinVar
,
Mohd Rashdan Abd Rahim et al. (2015)
,
ClinVar
HBB_000033
-
1/1, 1/25, 2/128, 4/396
-
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.27_28insG
-
r.(?)
p.(Ser10Valfs*14)
-
ClinVar
g.5226994_5226995insC
-
Hassan S at al. 2013
dbSNP
HBB_000010
rs35699606
4/169
-
MyHVP
+/.
2
1
c.46delT
CD 15 (-T)
r.(?)
p.(Trp16Glyfs*4)
-
ClinVar
g.5226976delA
CD 15 (-T)
S Fucharoen et al. (1990)
,
dbSNP
,
ClinVar
HBB_000043
rs63749960
0, 1/7
-
Nuur Athirah Binti Mohd Daud
+/.
7
1
c.47G>A
CD 15 TGG>TAG
r.(?)
p.(Trp16*)
-
ClinVar
g.5226975C>T
CD 15 TGG>TAG
E George et al. (1992)
,
dbSNP
,
(OMIM 0313)
,
ClinVar
,
Hassan et al. (2013)
dbSNP
,
Tan Ja
dbSNP
,
4 more items
HBB_000020
rs63750783
1/279, 1/3, 1/322, 1/91, 2/40, 2/7
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
+/.
1
1
c.48G>A
-
r.(?)
p.(Trp16*)
-
ClinVar
g.5226974C>T
-
Hassan S et al. 2013
dbSNP
HBB_000017
rs34716011
1/169
-
MyHVP
+/.
2
1
c.51delC
CD 16, CD 16 (GGC>GG-)
r.(?)
p.(Lys18Argfs*2)
-
ClinVar
g.5226971delG
CD 16, CD 16 (GGC>GG-)
dbSNP
,
Mohd Rashdan Abd Rahim et al. (2015)
,
dbSNP
,
ClinVar
HBB_000044
rs35662066
1, 1/1
-
Nuur Athirah Binti Mohd Daud
+/.
21
1
c.52A>T
CD 17 (AAG>TAG), CD 17 A>T, CD17
r.(?)
p.(Lys18*)
-
Pathogenic,
ClinVar
,
ClinVar
,
ClinVar
g.5226970T>A
CD 17 (AAG>TAG), CD 17 A>T
dbSNP
,
(OMIM 0311)
,
ClinVar
,
E George et al. (1992)
,
dbSNP
,
(OMIM 0311)
,
ClinVar
,
Tan Ja
dbSNP
,
13 more items
HBB_000011
rs33986703
1/12, 1/28, 1/3, 1/41, 1/46, 1/504, 13/154, 2/274, 2/34, 2/40, 2/76, 2/91, 27/322, 3/169, 3/396, 4/24,
3 more items
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
23
1
c.59A>G
CD 19 (AAC>AGC) / Hb Malay, CD 19 A>G / Hb Malay, CD19
r.(?)
p.(Asn20Ser)
-
Pathogenic,
ClinVar
,
ClinVar
,
ClinVar
g.5226963T>C
CD 19 (AAC>AGC) / Hb Malay, CD 19 A>G / Hb Malay
dbSNP
,
(OMIM 0168)
,
DXR Koh et al. (2017)
,
dbSNP
,
(OMIM 0168)
ClinVar
,
Hassan et al. (2013)
dbSNP
,
16 more items
HBB_000012
rs33972047
1/16, 1/25, 1/46, 10/141, 18/274, 2/21, 2/26, 2/322, 2/40, 20/396, 3/279, 3/28, 3/396, 3/76, 5/741,
4 more items
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/+, +/.
39
1
c.79G>A
Cd 26 (GAG>AAG) HbE (βE), CD 26 G>A / HbE, CD 26 GAG>AAG / HbE, CD26 (HbE), CD26, HbE,
1 more item
r.(?)
p.(Glu27Lys)
coding
Pathogenic / Likely Pathogenic, Pathogenic,
ClinVar
,
ClinVar
g.5226943C>T
CD 26 G>A / HbE, CD 26 GAG>AAG / HbE
dbSNP
,
(OMIM 0071)
,
ClinVar
,
DXR Koh et al. (2017)
,
dbSNP
,
(OMIM 0071)
,
ClinVar
,
Hassan
dbSNP
,
[1]
,
21 more items
HBB_000006
rs33950507
1/1, 1/2, 1/3, 1/7, 1/91, 10/16, 11/28, 129/396, 15/322, 15/46, 2/151, 2/154, 2/169, 2/24, 2/3, 2/741,
17 more items
1 more item
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/., ./.
3
1
c.85dupC
CD 27/28 (+C)
r.(?)
p.(Leu29Profs*16)
-
ClinVar
g.5226937dupG
CD 27/28 (+C)
Meow-Keong Thong et al. (2005)
,
dbSNP
,
(OMIM 0342)
,
ClinVar
,
2 more items
HBB_000038
rs35532010
1/12, 2/91, 3/322
-
Nuur Athirah Binti Mohd Daud
+/.
1
1i
c.92G>C
CD 30 (G>C) / Hb Monroe
r.(?)
p.(Arg31Thr)
-
ClinVar
g.5226930C>G
CD 30 (G>C) / Hb Monroe
Lai Kuan Teh et al. (2014)
,
dbSNP
,
(OMIM 0144)
,
ClinVar
HBB_000039
rs33960103
1/504
-
Nuur Athirah Binti Mohd Daud
+/.
5
1i
c.92+1G>A
IVS I-1 G>A, IVS1-1(G>A)
r.spl?
p.?
-
ClinVar
,
ClinVar
g.5226929C>T
IVS I-1 G>A
Hassan et al. (2013)
dbSNP
,
Hassan S et al. 2013
dbSNP
,
Jin-Ai M A Tan et al.(2014)
dbSNP
,
2 more items
HBB_000013
rs33971440
1/140, 1/169, 1/21, 2/396
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/+, +/., ./.
25
1i
c.92+1G>T
IVS I-1 (G>T), IVS1-1 (G→T), VS I-1 (G>T)
r.spl?
p.?
splice
Pathogenic / Likely Pathogenic, Pathogenic,
ClinVar
g.5226929C>A
IVS I-1 (G>T), VS I-1 (G>T)
dbSNP
,
(OMIM 0347)
,
ClinVar
,
E George et al. (1992)
,
dbSNP
,
(OMIM 0347)
,
ClinVar
,
Hassan S
dbSNP
,
16 more items
HBB_000004, HBB_000018
rs33915217
,
rs33971440
1/151, 1/154, 1/16, 1/21, 1/25, 1/3, 1/76, 19/274, 2/46, 23/279, 24, 27/169, 3/396, 3/41, 3/87, 36/396,
6 more items
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
,
MyHVP Team
+/.
3
1i
c.92+2T>C
IVS I-2 (T>C)
r.spl?
p.?
-
ClinVar
g.5226928A>G
IVS I-2 (T>C)
E George et al. (1992)
,
dbSNP
,
(OMIM 0350)
,
ClinVar
,
2 more items
HBB_000032
rs33956879
6/396, 7/279, 9/141
-
Nuur Athirah Binti Mohd Daud
+/.
1
1i
c.92+2T>G
IVS I-2 (T>G)
r.spl?
p.?
-
ClinVar
g.5226928A>C
IVS I-2 (T>G)
Lai Kuan Teh et al. (2014)
,
dbSNP
,
(OMIM 0349)
,
ClinVar
HBB_000040
rs33956879
1/504
-
Nuur Athirah Binti Mohd Daud
+/+, +/.
32
1i
c.92+5G>C
IVS 1-5 (G→C), IVS I-5 (G>C)
r.spl?
p.?
-
Pathogenic
ClinVar
,
ClinVar
,
ClinVar
,
ClinVar
g.5226925C>G
IVS I-5 (G>C)
Faidatul Syazlin Abdul Hamid et al.(2015): 10.4172/2155-9864.1000260,
dbSNP
,
(OMIM 0357)
,
ClinVar
,
21 more items
HBB_000003
rs33915217
0, 1/169, 1/2, 1/24, 1/25, 1/76, 11/40, 14/25, 14/46, 2/128, 2/16, 2/2, 2/46, 2/504, 2/741, 20/41, 3/4,
12 more items
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+?/.
1
1i
c.92+65G>A
IVS I-65 (G>A)
r.(=)
p.(=)
-
-
g.5226865C>T
IVS I-65 (G>A)
HBB_000063
-
1
-
Nuur Athirah Binti Mohd Daud
+/.
1
1i
c.93-22_95del
IVS-1 25bp Deletion
r.?
p.?
-
ClinVar
g.5226797_5226821del
-
Faidatul Syazlin Abdul Hamid et al.(2015): 10.4172/2155-9864.1000260
HBB_000065
rs193922563
-
-
Nur Aisyah Athirah
+/.
1
2
c.101_106delTGGTCT
CD 33-35 (-TGGTCT)
r.(?)
p.(Val34_Tyr36delinsAsp)
-
-
g.5226786_5226791delAGACCA
CD 33-35 (-TGGTCT)
K G Yang et al. (1989)
,
dbSNP
HBB_000042
rs35389895
2/41
-
Nuur Athirah Binti Mohd Daud
+?/.
1
2
c.108delC
CD 35 (TAC>TA-)
r.(?)
p.(Pro37Leufs*25)
-
-
g.5226784delG
CD 35 (TAC>TA-)
HBB_000060
-
2
-
Nuur Athirah Binti Mohd Daud
./.
1
2
c.114G>A
CD 37 (TGG>TGA)
r.(?)
p.(Trp38*)
-
ClinVar
g.5226778C>T
CD 37 (TGG>TGA)
M Sivalingam et al. (2012)
,
dbSNP
,
(OMIM 0315)
,
ClinVar
HBB_000037
rs33974936
1/396
-
Nuur Athirah Binti Mohd Daud
./.
1
-
c.124_127delTTCT
-
r.(?)
p.(Phe42Leufs*19)
-
ClinVar
g.5226765_5226768delAGAA
-
Hassan S et al. 2013
dbSNP
HBB_000007
rs80356821
13/169
-
MyHVP
+/.
1
2
c.126_129del
Cd 41/42 (-TTCT) (β0)
r.(?)
p.(Phe42Leufs*19)
-
ClinVar
g.5226763_5226766del
-
Saad HKM et al. (2023)
HBB_000070
-
21/65 (32.3%)
1 more item
MyHVP
+/., ./., ?/.
39
-, 2
c.126_129delCTTT
c.127_130delCTTT, CD 41/42, c.127_130delCTTT, CD41/42, cd 41-42, CD 41/42 (-CTTT)
r.(?)
p.(Phe42Leufs*19)
-
Pathogenic/Likely pathogenic,
ClinVar
,
ClinVar
g.5226763_5226766delAAAG
cd 41-42, CD 41/42 (-CTTT)
dbSNP
,
(OMIM 0326)
,
ClinVar
,
E George et al. (1992)
,
dbSNP
,
(OMIM 0326)
,
ClinVar
,
Hassan S
dbSNP
,
20 more items
HBB_000014
rs281864900
,
rs80356821
1/1, 1/12, 1/16, 1/3, 1/46, 121/322, 13/24, 13/34, 14/140, 14/169, 14/220, 14/24, 2/15, 3/12, 3/21,
16 more items
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
,
Nurul Atika Binti Musa
+/.
4
2
c.130G>T
CD 43 (GAG>TAG)
r.(?)
p.(Glu44*)
-
ClinVar
g.5226762C>A
CD 43 (GAG>TAG)
Hassan et al. (2013)
dbSNP
,
J A M A Tan et al. (2004)
,
dbSNP
,
(OMIM 0316)
,
ClinVar
,
2 more items
HBB_000023
rs33922842
1/34, 2/151, 2/3, 5/322
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.216_217insA
CD71/72
r.(?)
p.(Ser73Lysfs*2)
-
Pathogenic
g.5226675_5226676insT
-
Jin-Ai M A Tan et al.(2014)
HBB_000066
rs606231217
-
-
Nur Aisyah Athirah
?/.
1
-
c.217dup
cd 71-72
r.(?)
p.(Ser73Lysfs*2)
-
ClinVar
g.5226675dup
cd 71-72
K L Tan et al. (2001)
dbSNP
HBB_000068
rs33969853
-
-
Nurul Atika Binti Musa
+/., ./.
16
2
c.217dupA
c.217dupA, CD 71/72 (+A)
r.(?)
p.(Ser73Lysfs*2)
-
ClinVar
,
ClinVar
g.5226675dupT
c.217dupA, CD 71/72 (+A)
dbSNP
ClinVar
,
dbSNP
M Sivalingam et al. (2012)
,
ClinVar
dbSNP
,
E George et al. (1992)
,
ClinVar
dbSNP
,
11 more items
HBB_000019
rs33969853
1/16, 1/2, 1/25, 1/279, 1/396, 1/46, 1/7, 10/87, 2/274, 2/34, 2/76, 2/91, 3/504, 5/151, 5/154, 9/322
-
MyHVP
,
Nuur Athirah Binti Mohd Daud
?/.
1
-
c.286A>G
-
r.(?)
p.(Lys96Glu)
-
ClinVar
g.5226606T>C
-
Rahimah Ahmad et al.(2012)
,
dbSNP
HBB_000067
rs33914359
14/150
-
Noorzalifah Binti Mazuki
+/.
1
2i
c.315+1G>T
-
r.spl?
p.?
-
ClinVar
g.5226576C>A
-
Tan Ja et al. 2006
dbSNP
HBB_000021
rs33945777
2/26
-
MyHVP
-?/.
1
2i
c.315+15C>T
IVS II-15 (C>T
r.(=)
p.(=)
-
ClinVar
g.5226562G>A
IVS II-15 (C>T
dbSNP
HBB_000047
rs756567448
2
-
Nuur Athirah Binti Mohd Daud
+?/.
1
2i
c.315+45A>G
IVS II-45 (A>G)
r.(=)
p.(=)
-
-
g.5226532T>C
IVS II-45 (A>G)
HBB_000046
-
2
-
Nuur Athirah Binti Mohd Daud
+?/.
1
2i
c.315+63T>C
IVS II-63 (T>C)
r.(=)
p.(=)
-
-
g.5226514A>G
IVS II-63 (T>C)
HBB_000055
-
1
-
Nuur Athirah Binti Mohd Daud
+?/.
1
2i
c.315+70G>A
IVS II-70 (G>A)
r.(=)
p.(=)
-
-
g.5226507C>T
IVS II-70 (G>A)
HBB_000054
-
3
-
Nuur Athirah Binti Mohd Daud
+?/.
1
2i
c.315+129G>A
IVS II-129 (G>A)
r.(=)
p.(=)
-
-
g.5226448C>T
IVS II-129 (G>A)
HBB_000053
-
1
-
Nuur Athirah Binti Mohd Daud
-/.
4
2i
c.315+180T>C
IVS II-180 (T>C)
r.(=)
p.(=)
-
ClinVar
g.5226397A>G
IVS II-180 (T>C)
dbSNP
,
dbSNP
HBB_000056
rs529931134
1, 6
-
Nuur Athirah Binti Mohd Daud
+?/.
1
2i
c.315+308delA
IVS II-308 (-A)
r.(=)
p.(=)
-
-
g.5226269delT
IVS II-308 (-A)
HBB_000064
-
4
-
Nuur Athirah Binti Mohd Daud
-/.
1
2i
c.316-373C>A
IVS II-478 (C>A)
r.(=)
p.(=)
-
ClinVar
g.5226099G>T
IVS II-478 (C>A)
dbSNP
HBB_000057
rs78815705
1
-
Nuur Athirah Binti Mohd Daud
-?/.
1
2i
c.316-238C>T
IVS II-613 (C>T)
r.(=)
p.(=)
-
ClinVar
g.5225964G>A
IVS II-613 (C>T)
dbSNP
HBB_000058
rs558554234
1
-
Nuur Athirah Binti Mohd Daud
+/.
29
2, 2i
c.316-197C>T
IVS II-654 C>T, IVS2-654, IVSII #654
r.(=)
p.(=)
-
Pathogenic / Likely Pathogenic,
ClinVar
,
ClinVar
g.5225923G>A
IVS II-654 C>T, IVSII #654
E George et al. (1992)
,
dbSNP
,
(OMIM 0368)
,
ClinVar
,
George et al. (1993)
dbSNP
,
Tan Ja
dbSNP
,
17 more items
HBB_000015
rs34451549
1/140, 1/15, 1/169, 1/2, 1/4, 1/46, 10/34, 12/396, 14/76, 18/279, 2/12, 25/91, 3/25, 3/41, 3/504, 3/7,
8 more items
MyHVP
,
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
,
Nurul Atika Binti Musa
./.
2
2i
c.316-179A>C
IVS II-672 (A>C)
r.(=)
p.(=)
-
ClinVar
g.5225905T>G
IVS II-672 (A>C)
dbSNP
,
dbSNP
HBB_000051
rs185607297
1
-
Nuur Athirah Binti Mohd Daud
./.
1
2i
c.316-45G>C
IVS II-806 (G>C)
r.(=)
p.(=)
-
ClinVar
g.5225771C>G
IVS II-806 (G>C)
dbSNP
HBB_000062
rs140033163
1
-
Nuur Athirah Binti Mohd Daud
+/.
1
3
c.370_378delACCCCACCA
CD 123-125 (-ACCCCACC) >135aa
r.(?)
p.(Thr124_Pro126del)
-
-
g.5225664_5225672delTGGTGGGGT
CD 123-125 (-ACCCCACC) >135aa
Lai Kuan Teh et al. (2014)
,
dbSNP
HBB_000041
rs281864902
1/504
-
Nuur Athirah Binti Mohd Daud
+?/.
1
-
c.*21A>G
3'UTR +21 A>G
r.(=)
p.(=)
-
-
g.5225577T>C
3'UTR +21 A>G
HBB_000059
-
1
-
Nuur Athirah Binti Mohd Daud
+/., -/.
3
3'UTR
c.*108A>G
-
r.(=)
p.(=)
-
-
g.5225490T>C
-
Hassan et al. (2013)
,
Hassan S et al. 2013
,
Tan Ja et al. 2006
HBB_000016
-
2/26, 5/140, 5/169
-
MyHVP
+/.
4
-
c.*110T>C
Poly A (A>G), Poly A (T>C)
r.(=)
p.(=)
-
ClinVar
,
ClinVar
g.5225488A>G
Poly A (T>C)
dbSNP
,
ClinVar
,
M Sivalingam et al. (2012)
,
dbSNP
,
(OMIM 0382)
,
2 more items
HBB_000034
rs33978907
0, 1/7, 2/396
-
Nuur Athirah Binti Mohd Daud
,
Noorzalifah Binti Mazuki
+/.
3
-
c.*111A>G
Poly A (A>G)
r.(=)
p.(=)
-
ClinVar
g.5225487T>C
Poly A (A>G)
J A M A Tan et al. (2004)
,
dbSNP
,
(OMIM 0399)
,
Meow-Keong Thong et al. (2005)
,
dbSNP
,
(OMIM 0399)
,
1 more item
HBB_000028
rs63751128
1/46, 2/21, 2/322
-
Nuur Athirah Binti Mohd Daud
+/.
7
-
c.*112A>G
c.+*112A>G, Poly A(A>G) AATAAA>AATAGA, Poly A (A>G), Poly A (A>G) AATAAA>AATAGA
r.(=)
p.(=)
-
Pathogenic / Likely Pathogenic,
ClinVar
g.5225486T>C
Poly A (A>G), Poly A (A>G) AATAAA>AATAGA
E George et al. (1992)
,
dbSNP
,
(OMIM 0386)
,
Jin-Ai M A Tan et al.(2014)
,
3 more items
HBB_000030
rs63750954
1/141, 1/2, 3/279, 4/504
-
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+?/.
2
-
c.*261T>C
3'UTR +261 T>C
r.(=)
p.(=)
-
-
g.5225337A>G
3'UTR +261 T>C
HBB_000045
-
1
-
Nuur Athirah Binti Mohd Daud
+/.
28
-
c.*5040864_*5159340del118477
Filipino (~45 kb deletion)
r.(=)
p.(=)
-
-
g.66258_184734del118477
Filipino (~45 kb deletion)
J A M A Tan et al. (2004)
,
Jin-Ai M A Tan et al.(2014)
,
Jin-Ai M A Tan et al.(2014)
,
,
3 more items
HBB_000025
-
11/15, 16/125, 25/322, 460/504
Filipino β-deletion
Nuur Athirah Binti Mohd Daud
,
Nur Aisyah Athirah
+/.
1
-
c.*5097900_*5176803del78904
Chinese (Aγδβ)0
r.(=)
p.(=)
-
-
g.48795_127698del78904
Chinese (Aγδβ)0
J A M A Tan et ai. (2004)
HBB_000027
-
2/151
-
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.*5153371_*5153989del619
619 bp deletion
r.(=)
p.(=)
-
-
g.71609_72227del619
619 bp deletion
Y C Wee et al. (2008)
,
ClinVar
HBB_000026
-
1/322
-
Nuur Athirah Binti Mohd Daud
+/.
2
-
c.*5154552_*5161966del
Hb Lepore
r.(=)
p.(=)
-
-
g.63632_71046del
Hb Lepore
E George et al. (1992)
,
(OMIM 0020)
HBB_000029
-
1/141, 1/76
-
Nuur Athirah Binti Mohd Daud
+/.
1
-
c.*5187631_*5191434del3804
-
r.(=)
p.(=)
-
-
g.34164_37967del3804
-
Jin-Ai Mary Anne Tan et al. (2010)
HBB_000024
-
42/125
-
Nuur Athirah Binti Mohd Daud
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