### LOVD-version 3000-290 ### Full data download ### To import, do not remove or alter this header ### ## Filter: (gene_public = TNFSF4) # charset = UTF-8 ## Genes ## Do not remove or alter this header ## ## Count = 1 "{{id}}" "{{name}}" "{{chromosome}}" "{{chrom_band}}" "{{imprinting}}" "{{refseq_genomic}}" "{{refseq_UD}}" "{{reference}}" "{{url_homepage}}" "{{url_external}}" "{{allow_download}}" "{{id_hgnc}}" "{{id_entrez}}" "{{id_omim}}" "{{show_hgmd}}" "{{show_genecards}}" "{{show_genetests}}" "{{show_orphanet}}" "{{note_index}}" "{{note_listing}}" "{{refseq}}" "{{refseq_url}}" "{{disclaimer}}" "{{disclaimer_text}}" "{{header}}" "{{header_align}}" "{{footer}}" "{{footer_align}}" "{{created_by}}" "{{created_date}}" "{{edited_by}}" "{{edited_date}}" "{{updated_by}}" "{{updated_date}}" "TNFSF4" "TNF superfamily member 4" "1" "q25.1" "unknown" "NG_011477.1" "UD_144439486506" "" "" "" "1" "11934" "7292" "603594" "1" "1" "1" "0" "" "" "" "" "1" "" "" "-1" "" "-1" "00001" "2021-01-07 09:17:16" "" "" "00005" "2021-09-01 15:17:09" ## Transcripts ## Do not remove or alter this header ## ## Count = 1 "{{id}}" "{{geneid}}" "{{name}}" "{{id_mutalyzer}}" "{{id_ncbi}}" "{{id_ensembl}}" "{{id_protein_ncbi}}" "{{id_protein_ensembl}}" "{{id_protein_uniprot}}" "{{remarks}}" "{{position_c_mrna_start}}" "{{position_c_mrna_end}}" "{{position_c_cds_end}}" "{{position_g_mrna_start}}" "{{position_g_mrna_end}}" "{{created_by}}" "{{created_date}}" "{{edited_by}}" "{{edited_date}}" "00000096" "TNFSF4" "transcript variant 1" "004" "NM_003326.4" "" "NP_003317.1" "" "" "" "-137" "3337" "552" "173207313" "173183731" "00001" "2021-01-07 09:17:16" "" "" ## Diseases ## Do not remove or alter this header ## ## Count = 1 "{{id}}" "{{symbol}}" "{{name}}" "{{inheritance}}" "{{id_omim}}" "{{tissues}}" "{{features}}" "{{remarks}}" "{{created_by}}" "{{created_date}}" "{{edited_by}}" "{{edited_date}}" "00056" "SLE" "systemic lupus erythematosus" "" "" "" "" "" "00001" "2021-01-07 09:14:57" "" "" ## Genes_To_Diseases ## Do not remove or alter this header ## ## Count = 1 "{{geneid}}" "{{diseaseid}}" "TNFSF4" "00056" ## Individuals ## Do not remove or alter this header ## ## Count = 3 "{{id}}" "{{fatherid}}" "{{motherid}}" "{{panelid}}" "{{panel_size}}" "{{license}}" "{{owned_by}}" "{{Individual/Reference}}" "{{Individual/Remarks}}" "{{Individual/Remarks_Non_Public}}" "{{Individual/Origin/Geographic}}" "{{Individual/Origin/Ethnic}}" "{{Individual/Origin/Population}}" "{{Individual/Gender}}" "00000333" "" "" "" "1" "" "00002" "{PMID:K H Chua et al. (2016):27519474}" "" "" "Malaysia" "Chinese" "" "" "00000334" "" "" "" "1" "" "00002" "{PMID:K H Chua et al. (2016):27519474}" "" "" "Malaysia" "Malay" "" "" "00000335" "" "" "" "1" "" "00002" "{PMID:K H Chua et al. (2016):27519474}" "" "" "Malaysia" "Indian" "" "" ## Individuals_To_Diseases ## Do not remove or alter this header ## ## Count = 3 "{{individualid}}" "{{diseaseid}}" "00000333" "00056" "00000334" "00056" "00000335" "00056" ## Phenotypes ## Do not remove or alter this header ## ## Note: Only showing Phenotype columns active for Diseases 00056 ## Count = 0 ## Screenings ## Do not remove or alter this header ## ## Count = 3 "{{id}}" "{{individualid}}" "{{variants_found}}" "{{owned_by}}" "{{created_by}}" "{{created_date}}" "{{edited_by}}" "{{edited_date}}" "{{Screening/Technique}}" "{{Screening/Template}}" "0000000348" "00000333" "1" "00002" "00002" "2021-01-07 11:05:37" "" "" "PCR;TaqMan" "DNA" "0000000349" "00000334" "1" "00002" "00002" "2021-01-07 11:21:20" "" "" "PCR;TaqMan" "DNA" "0000000350" "00000335" "1" "00002" "00002" "2021-01-07 11:29:34" "" "" "PCR;TaqMan" "DNA" ## Screenings_To_Genes ## Do not remove or alter this header ## ## Count = 3 "{{screeningid}}" "{{geneid}}" "0000000348" "TNFSF4" "0000000349" "TNFSF4" "0000000350" "TNFSF4" ## Variants_On_Genome ## Do not remove or alter this header ## ## Please note that not necessarily all variants found in the given individuals are shown. This output is restricted to variants in the selected gene. ## Count = 12 "{{id}}" "{{allele}}" "{{effectid}}" "{{chromosome}}" "{{position_g_start}}" "{{position_g_end}}" "{{type}}" "{{average_frequency}}" "{{owned_by}}" "{{VariantOnGenome/DBID}}" "{{VariantOnGenome/DNA}}" "{{VariantOnGenome/Frequency}}" "{{VariantOnGenome/Reference}}" "{{VariantOnGenome/Published_as}}" "{{VariantOnGenome/Remarks}}" "{{VariantOnGenome/dbSNP}}" "0000001556" "0" "90" "1" "173222336" "173222336" "subst" "0" "00002" "TNFSF4_000001" "g.173222336G>T" "132/336" "{PMID:K H Chua et al. (2016):27519474}, {dbSNP:rs2205960}" "" "" "rs2205960" "0000001557" "3" "90" "1" "173222336" "173222336" "subst" "0" "00002" "TNFSF4_000001" "g.173222336G>T" "33/336" "{PMID:K H Chua et al. (2016):27519474}, {dbSNP:rs2205960}" "" "" "rs2205960" "0000001558" "0" "90" "1" "173257056" "173257056" "subst" "0" "00002" "TNFSF4_000002" "g.173257056T>G" "163/336" "{PMID:K H Chua et al. (2016):27519474}, {dbSNP:rs704840}" "" "" "rs704840" "0000001559" "3" "90" "1" "173257056" "173257056" "subst" "0" "00002" "TNFSF4_000002" "g.173257056T>G" "70/336" "{PMID:K H Chua et al. (2016):27519474}, {dbSNP:rs704840}" "" "" "rs704840" "0000001560" "0" "90" "1" "173222336" "173222336" "subst" "0" "00002" "TNFSF4_000001" "g.173222336G>T" "34/109" "{PMID:K H Chua et al. (2016):27519474}, {dbSNP:rs2205960}" "" "" "rs2205960" "0000001561" "3" "90" "1" "173222336" "173222336" "subst" "0" "00002" "TNFSF4_000001" "g.173222336G>T" "4/109" "{PMID:K H Chua et al. (2016):27519474}, {dbSNP:rs2205960}" "" "" "rs2205960" "0000001562" "0" "90" "1" "173257056" "173257056" "subst" "0" "00002" "TNFSF4_000002" "g.173257056T>G" "53/109" "{PMID:K H Chua et al. (2016):27519474}, {dbSNP:rs704840}" "" "" "rs704840" "0000001563" "3" "90" "1" "173257056" "173257056" "subst" "0" "00002" "TNFSF4_000002" "g.173257056T>G" "12/109" "{PMID:K H Chua et al. (2016):27519474}, {dbSNP:rs704840}" "" "" "rs704840" "0000001564" "0" "90" "1" "173222336" "173222336" "subst" "0" "00002" "TNFSF4_000001" "g.173222336G>T" "14/31" "{PMID:K H Chua et al. (2016):27519474}, {dbSNP:rs2205960}" "" "" "rs2205960" "0000001565" "3" "90" "1" "173222336" "173222336" "subst" "0" "00002" "TNFSF4_000001" "g.173222336G>T" "5/31" "{PMID:K H Chua et al. (2016):27519474}, {dbSNP:rs2205960}" "" "" "rs2205960" "0000001566" "0" "90" "1" "173257056" "173257056" "subst" "0" "00002" "TNFSF4_000002" "g.173257056T>G" "11/31" "{PMID:K H Chua et al. (2016):27519474}, {dbSNP:rs704840}" "" "" "rs704840" "0000001567" "3" "90" "1" "173257056" "173257056" "subst" "0" "00002" "TNFSF4_000002" "g.173257056T>G" "6/31" "{PMID:K H Chua et al. (2016):27519474}, {dbSNP:rs704840}" "" "" "rs704840" ## Variants_On_Transcripts ## Do not remove or alter this header ## ## Please note that not necessarily all variants found in the given individuals are shown. This output is restricted to variants in the selected gene. ## Note: Only showing Variants_On_Transcript columns active for Genes TNFSF4 ## Count = 12 "{{id}}" "{{transcriptid}}" "{{effectid}}" "{{position_c_start}}" "{{position_c_start_intron}}" "{{position_c_end}}" "{{position_c_end_intron}}" "{{VariantOnTranscript/DNA}}" "{{VariantOnTranscript/Exon}}" "{{VariantOnTranscript/Protein}}" "{{VariantOnTranscript/RNA}}" "{{VariantOnTranscript/Published_as}}" "{{VariantOnTranscript/GVS/Function}}" "{{VariantOnTranscript/VariantOnTranscript}}" "0000001556" "00000096" "90" "-15160" "0" "-15160" "0" "c.-15160C>A" "" "p.(=)" "r.(=)" "" "" "" "0000001557" "00000096" "90" "-15160" "0" "-15160" "0" "c.-15160C>A" "" "p.(=)" "r.(=)" "" "" "" "0000001558" "00000096" "90" "-49880" "0" "-49880" "0" "c.-49880A>C" "" "p.(=)" "r.(=)" "" "" "" "0000001559" "00000096" "90" "-49880" "0" "-49880" "0" "c.-49880A>C" "" "p.(=)" "r.(=)" "" "" "" "0000001560" "00000096" "90" "-15160" "0" "-15160" "0" "c.-15160C>A" "" "p.(=)" "r.(=)" "" "" "" "0000001561" "00000096" "90" "-15160" "0" "-15160" "0" "c.-15160C>A" "" "p.(=)" "r.(=)" "" "" "" "0000001562" "00000096" "90" "-49880" "0" "-49880" "0" "c.-49880A>C" "" "p.(=)" "r.(=)" "" "" "" "0000001563" "00000096" "90" "-49880" "0" "-49880" "0" "c.-49880A>C" "" "p.(=)" "r.(=)" "" "" "" "0000001564" "00000096" "90" "-15160" "0" "-15160" "0" "c.-15160C>A" "" "p.(=)" "r.(=)" "" "" "" "0000001565" "00000096" "90" "-15160" "0" "-15160" "0" "c.-15160C>A" "" "p.(=)" "r.(=)" "" "" "" "0000001566" "00000096" "90" "-49880" "0" "-49880" "0" "c.-49880A>C" "" "p.(=)" "r.(=)" "" "" "" "0000001567" "00000096" "90" "-49880" "0" "-49880" "0" "c.-49880A>C" "" "p.(=)" "r.(=)" "" "" "" ## Screenings_To_Variants ## Do not remove or alter this header ## ## Count = 12 "{{screeningid}}" "{{variantid}}" "0000000348" "0000001556" "0000000348" "0000001557" "0000000348" "0000001558" "0000000348" "0000001559" "0000000349" "0000001560" "0000000349" "0000001561" "0000000349" "0000001562" "0000000349" "0000001563" "0000000350" "0000001564" "0000000350" "0000001565" "0000000350" "0000001566" "0000000350" "0000001567"