### LOVD-version 3000-290 ### Full data download ### To import, do not remove or alter this header ### ## Filter: (gene_public = AMT) # charset = UTF-8 ## Genes ## Do not remove or alter this header ## ## Count = 1 "{{id}}" "{{name}}" "{{chromosome}}" "{{chrom_band}}" "{{imprinting}}" "{{refseq_genomic}}" "{{refseq_UD}}" "{{reference}}" "{{url_homepage}}" "{{url_external}}" "{{allow_download}}" "{{id_hgnc}}" "{{id_entrez}}" "{{id_omim}}" "{{show_hgmd}}" "{{show_genecards}}" "{{show_genetests}}" "{{show_orphanet}}" "{{note_index}}" "{{note_listing}}" "{{refseq}}" "{{refseq_url}}" "{{disclaimer}}" "{{disclaimer_text}}" "{{header}}" "{{header_align}}" "{{footer}}" "{{footer_align}}" "{{created_by}}" "{{created_date}}" "{{edited_by}}" "{{edited_date}}" "{{updated_by}}" "{{updated_date}}" "AMT" "aminomethyltransferase" "3" "p21.31" "unknown" "LRG_537" "UD_144407779690" "" "" "" "1" "473" "275" "238310" "1" "1" "1" "0" "" "" "" "" "1" "" "" "-1" "" "-1" "00001" "2021-02-01 10:15:42" "" "" "00005" "2021-09-05 14:18:58" ## Transcripts ## Do not remove or alter this header ## ## Count = 1 "{{id}}" "{{geneid}}" "{{name}}" "{{id_mutalyzer}}" "{{id_ncbi}}" "{{id_ensembl}}" "{{id_protein_ncbi}}" "{{id_protein_ensembl}}" "{{id_protein_uniprot}}" "{{remarks}}" "{{position_c_mrna_start}}" "{{position_c_mrna_end}}" "{{position_c_cds_end}}" "{{position_g_mrna_start}}" "{{position_g_mrna_end}}" "{{created_by}}" "{{created_date}}" "{{edited_by}}" "{{edited_date}}" "00000112" "AMT" "transcript variant 1" "005" "NM_000481.3" "" "NP_000472.2" "" "" "" "-228" "1974" "1212" "49422678" "49416778" "00001" "2021-02-01 10:15:42" "" "" ## Diseases ## Do not remove or alter this header ## ## Count = 1 "{{id}}" "{{symbol}}" "{{name}}" "{{inheritance}}" "{{id_omim}}" "{{tissues}}" "{{features}}" "{{remarks}}" "{{created_by}}" "{{created_date}}" "{{edited_by}}" "{{edited_date}}" "00062" "GCE" "Glycine encephalopathy/nonketotic hyperglycinemia" "" "" "" "" "" "00001" "2021-02-01 10:14:56" "" "" ## Genes_To_Diseases ## Do not remove or alter this header ## ## Count = 1 "{{geneid}}" "{{diseaseid}}" "AMT" "00062" ## Individuals ## Do not remove or alter this header ## ## Count = 4 "{{id}}" "{{fatherid}}" "{{motherid}}" "{{panelid}}" "{{panel_size}}" "{{license}}" "{{owned_by}}" "{{Individual/Reference}}" "{{Individual/Remarks}}" "{{Individual/Remarks_Non_Public}}" "{{Individual/Origin/Geographic}}" "{{Individual/Origin/Ethnic}}" "{{Individual/Origin/Population}}" "{{Individual/Gender}}" "00000390" "" "" "" "1" "" "00002" "{PMID:Nor Azimah Abdul Azize et al. (2014):25231368}" "" "" "Malaysia" "Malay" "" "F" "00000391" "" "" "" "1" "" "00002" "{PMID:Nor Azimah Abdul Azize et al. (2014):25231368}" "" "" "Malaysia" "Chinese" "" "F" "00000392" "" "" "" "1" "" "00002" "{PMID:Nor Azimah Abdul Azize et al. (2014):25231368}" "" "" "Malaysia" "Malay" "" "M" "00000393" "" "" "" "1" "" "00002" "{PMID:Nor Azimah Abdul Azize et al. (2014):25231368}" "" "" "Malaysia" "Penan" "" "F" ## Individuals_To_Diseases ## Do not remove or alter this header ## ## Count = 4 "{{individualid}}" "{{diseaseid}}" "00000390" "00062" "00000391" "00062" "00000392" "00062" "00000393" "00062" ## Phenotypes ## Do not remove or alter this header ## ## Note: Only showing Phenotype columns active for Diseases 00062 ## Count = 4 "{{id}}" "{{diseaseid}}" "{{individualid}}" "{{owned_by}}" "{{Phenotype/Additional}}" "{{Phenotype/Inheritance}}" "0000000137" "00062" "00000390" "00002" "" "Familial, autosomal recessive" "0000000138" "00062" "00000391" "00002" "" "Familial, autosomal recessive" "0000000139" "00062" "00000392" "00002" "" "Familial, autosomal recessive" "0000000140" "00062" "00000393" "00002" "" "Familial, autosomal recessive" ## Screenings ## Do not remove or alter this header ## ## Count = 4 "{{id}}" "{{individualid}}" "{{variants_found}}" "{{owned_by}}" "{{created_by}}" "{{created_date}}" "{{edited_by}}" "{{edited_date}}" "{{Screening/Technique}}" "{{Screening/Template}}" "0000000404" "00000390" "1" "00002" "00002" "2021-02-01 10:21:38" "" "" "MLPA;PCR;SEQ" "DNA" "0000000405" "00000391" "1" "00002" "00002" "2021-02-01 10:34:16" "" "" "MLPA;PCR;SEQ" "DNA" "0000000406" "00000392" "1" "00002" "00002" "2021-02-01 10:43:59" "" "" "MLPA;PCR;SEQ" "DNA" "0000000407" "00000393" "1" "00002" "00002" "2021-02-01 10:52:05" "" "" "MLPA;PCR;SEQ" "DNA" ## Screenings_To_Genes ## Do not remove or alter this header ## ## Count = 4 "{{screeningid}}" "{{geneid}}" "0000000404" "AMT" "0000000405" "AMT" "0000000406" "AMT" "0000000407" "AMT" ## Variants_On_Genome ## Do not remove or alter this header ## ## Please note that not necessarily all variants found in the given individuals are shown. This output is restricted to variants in the selected gene. ## Count = 7 "{{id}}" "{{allele}}" "{{effectid}}" "{{chromosome}}" "{{position_g_start}}" "{{position_g_end}}" "{{type}}" "{{average_frequency}}" "{{owned_by}}" "{{VariantOnGenome/DBID}}" "{{VariantOnGenome/DNA}}" "{{VariantOnGenome/Frequency}}" "{{VariantOnGenome/Reference}}" "{{VariantOnGenome/Published_as}}" "{{VariantOnGenome/Remarks}}" "{{VariantOnGenome/dbSNP}}" "0000001835" "0" "90" "3" "49419292" "49419292" "subst" "0" "00002" "AMT_000001" "g.49419292G>A" "1/4" "{PMID:Nor Azimah Abdul Azize et al. (2014):25231368}, {dbSNP:rs781466698}, {ClinVar:552860}" "" "" "rs781466698" "0000001836" "0" "90" "3" "49419268" "49419268" "subst" "0" "00002" "AMT_000002" "g.49419268C>G" "1/4" "{PMID:Nor Azimah Abdul Azize et al. (2014):25231368}" "" "" "" "0000001837" "0" "90" "3" "49419022" "49419022" "subst" "0" "00002" "AMT_000003" "g.49419022C>G" "1" "{PMID:Nor Azimah Abdul Azize et al. (2014):25231368}, {dbSNP:rs121964984}, {OMIM:238310:0005}, {ClinVar:11978}" "" "" "rs121964984" "0000001838" "0" "90" "3" "49417869" "49417869" "del" "0" "00002" "AMT_000004" "g.49417869delC" "1" "{PMID:Nor Azimah Abdul Azize et al. (2014):25231368}, {dbSNP:rs1553638266}, {ClinVar:557221}" "" "" "rs1553638266" "0000001839" "0" "90" "3" "49419292" "49419292" "subst" "0" "00002" "AMT_000001" "g.49419292G>A" "1/4" "{PMID:Nor Azimah Abdul Azize et al. (2014):25231368}, {dbSNP:rs781466698}, {ClinVar:552860}" "" "" "rs781466698" "0000001840" "0" "50" "3" "49419268" "49419268" "subst" "0" "00002" "AMT_000002" "g.49419268C>G" "1/4" "{PMID:Nor Azimah Abdul Azize et al. (2014):25231368}, {dbSNP:rs1568206043} ,{ClinVar: 575340}" "" "" "rs1568206043" "0000001841" "3" "90" "3" "49419054" "49419054" "subst" "0" "00002" "AMT_000005" "g.49419054C>T" "3" "{PMID:Nor Azimah Abdul Azize et al. (2014):25231368}, {dbSNP:rs757918826}, {ClinVar:550886}" "" "" "rs757918826" ## Variants_On_Transcripts ## Do not remove or alter this header ## ## Please note that not necessarily all variants found in the given individuals are shown. This output is restricted to variants in the selected gene. ## Note: Only showing Variants_On_Transcript columns active for Genes AMT ## Count = 7 "{{id}}" "{{transcriptid}}" "{{effectid}}" "{{position_c_start}}" "{{position_c_start_intron}}" "{{position_c_end}}" "{{position_c_end_intron}}" "{{VariantOnTranscript/DNA}}" "{{VariantOnTranscript/Exon}}" "{{VariantOnTranscript/Protein}}" "{{VariantOnTranscript/RNA}}" "{{VariantOnTranscript/Published_as}}" "{{VariantOnTranscript/GVS/Function}}" "{{VariantOnTranscript/VariantOnTranscript}}" "0000001835" "00000112" "90" "664" "0" "664" "0" "c.664C>T" "6" "p.(Arg222Cys)" "r.(?)" "" "" "{ClinVar:552860}" "0000001836" "00000112" "90" "688" "0" "688" "0" "c.688G>C" "6" "p.(Gly230Arg)" "r.(?)" "" "" "" "0000001837" "00000112" "90" "826" "0" "826" "0" "c.826G>C" "7" "p.(Asp276His)" "r.(?)" "" "" "{ClinVar:11978}" "0000001838" "00000112" "90" "982" "0" "982" "0" "c.982delG" "8" "p.(Ala328Profs*10)" "r.(?)" "" "" "{ClinVar:557221}" "0000001839" "00000112" "90" "664" "0" "664" "0" "c.664C>T" "6" "p.(Arg222Cys)" "r.(?)" "" "" "{ClinVar:552860}" "0000001840" "00000112" "50" "688" "0" "688" "0" "c.688G>C" "6" "p.(Gly230Arg)" "r.(?)" "" "" "{ClinVar: 575340}" "0000001841" "00000112" "90" "794" "0" "794" "0" "c.794G>A" "7" "p.(Arg265His)" "r.(?)" "" "" "{ClinVar:550886}" ## Screenings_To_Variants ## Do not remove or alter this header ## ## Count = 7 "{{screeningid}}" "{{variantid}}" "0000000404" "0000001835" "0000000404" "0000001836" "0000000405" "0000001837" "0000000405" "0000001838" "0000000406" "0000001839" "0000000406" "0000001840" "0000000407" "0000001841"